Magnesium in PDB 4jn9: Crystal Structure of the Deph

The structure of Crystal Structure of the Deph, PDB code: 4jn9 was solved by J.Li, C.Wang, Z.M.Zhang, J.H.Zhou, E.Cheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.52 / 1.90
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	78.120, 78.120, 187.415, 90.00, 90.00, 120.00
R / Rfree (%)	16.2 / 19.7

The structure of Crystal Structure of the Deph also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of the Deph (pdb code 4jn9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Deph, PDB code: 4jn9:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Deph


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Deph within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:26.1 occ:1.00 OG A:SER90 2.9 20.0 1.0 C A:HIS91 3.1 20.6 1.0 N A:VAL93 3.1 10.8 1.0 N A:HIS91 3.2 15.7 1.0 CA A:HIS91 3.2 19.6 1.0 O A:GLN96 3.2 19.1 1.0 C A:SER90 3.3 16.9 1.0 O A:SER90 3.4 19.6 1.0 N A:GLY92 3.4 17.5 1.0 CB A:VAL93 3.4 13.8 1.0 O A:HIS91 3.4 18.9 1.0 CG2 A:VAL93 3.5 19.2 1.0 C A:GLN96 3.6 22.0 1.0 CA A:ASP97 3.7 18.6 1.0 CA A:VAL93 3.7 12.5 1.0 CB A:SER90 3.8 21.5 1.0 O A:VAL93 3.8 14.5 1.0 N A:ASP97 3.9 17.6 1.0 C A:GLY92 4.1 15.9 1.0 CB A:GLN96 4.1 17.0 1.0 CA A:SER90 4.2 15.4 1.0 C A:VAL93 4.2 16.2 1.0 CA A:GLY92 4.3 17.8 1.0 N A:GLY98 4.5 20.8 1.0 OD1 A:ASP97 4.5 22.8 1.0 CA A:GLN96 4.5 16.1 1.0 C A:ASP97 4.6 22.9 1.0 CB A:ASP97 4.6 15.9 1.0 CB A:HIS91 4.7 16.6 1.0 CG1 A:VAL93 4.8 19.5 1.0 CD1 A:ILE104 4.8 19.8 1.0 N3 A:FAD401 5.0 14.9 1.0

J.Li, C.Wang, Z.M.Zhang, Y.Q.Cheng, J.Zhou. The Structural Basis of An Nadp+-Independent Dithiol Oxidase in FK228 Biosynthesis. Sci Rep V. 4 4145 2014.
ISSN: ESSN 2045-2322
PubMed: 24553401
DOI: 10.1038/SREP04145