Magnesium in PDB 4jqp: X-Ray Crystal Structure of A 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Burkholderia Phymatum

All present enzymatic activity of X-Ray Crystal Structure of A 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Burkholderia Phymatum:
1.1.1.262;

The structure of X-Ray Crystal Structure of A 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Burkholderia Phymatum, PDB code: 4jqp was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.91 / 1.65
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	48.980, 99.280, 71.030, 90.00, 93.92, 90.00
R / Rfree (%)	14.8 / 17.4

The structure of X-Ray Crystal Structure of A 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Burkholderia Phymatum also contains other interesting chemical elements:

Calcium	(Ca)	2 atoms
Zinc	(Zn)	2 atoms

The binding sites of Magnesium atom in the X-Ray Crystal Structure of A 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Burkholderia Phymatum (pdb code 4jqp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the X-Ray Crystal Structure of A 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Burkholderia Phymatum, PDB code: 4jqp:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the X-Ray Crystal Structure of A 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Burkholderia Phymatum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Crystal Structure of A 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Burkholderia Phymatum within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:14.7 occ:0.60 O A:HOH667 2.0 23.6 1.0 O A:HOH904 2.0 39.0 1.0 O A:HOH572 2.1 16.3 1.0 O A:HOH626 2.2 23.0 1.0 O A:HOH905 2.2 38.9 1.0 O A:HOH609 4.1 18.3 1.0 NZ A:LYS35 4.1 12.7 1.0 O A:HOH677 4.2 26.1 1.0 OE1 A:GLU325 4.2 12.3 1.0 OE2 A:GLU325 4.3 12.7 1.0 CE A:LYS35 4.5 12.2 1.0 CD A:LYS35 4.5 11.5 1.0 CD A:GLU325 4.7 12.2 1.0 O A:HOH564 5.0 20.1 1.0

Magnesium binding site 2 out of 2 in the X-Ray Crystal Structure of A 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Burkholderia Phymatum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of X-Ray Crystal Structure of A 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Burkholderia Phymatum within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:17.1 occ:0.70 O B:HOH608 1.9 24.5 1.0 O B:HOH617 2.1 19.4 1.0 O B:HOH891 2.2 43.3 1.0 O B:HOH673 2.3 26.1 1.0 NZ B:LYS35 4.0 11.2 1.0 O B:HOH580 4.1 16.2 1.0 O B:HOH815 4.2 27.5 1.0 OE1 B:GLU325 4.2 12.8 1.0 O B:HOH599 4.3 28.8 1.0 OE2 B:GLU325 4.3 13.5 1.0 CE B:LYS35 4.6 11.0 1.0 CD B:LYS35 4.6 10.8 1.0 CD B:GLU325 4.7 13.0 1.0

J.W.Fairman, M.C.Clifton, T.E.Edwards, D.Lorimer. X-Ray Crystal Structure of A 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Burkholderia Phymatum To Be Published.