Magnesium in PDB 4jrc: Distal Stem I Region From G. Kaustophilus Glyqs T Box Rna

The structure of Distal Stem I Region From G. Kaustophilus Glyqs T Box Rna, PDB code: 4jrc was solved by J.C.Grigg, A.Ke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.14 / 2.67
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	116.461, 41.511, 90.417, 90.00, 106.76, 90.00
R / Rfree (%)	20.1 / 24.3

The binding sites of Magnesium atom in the Distal Stem I Region From G. Kaustophilus Glyqs T Box Rna (pdb code 4jrc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Distal Stem I Region From G. Kaustophilus Glyqs T Box Rna, PDB code: 4jrc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Distal Stem I Region From G. Kaustophilus Glyqs T Box Rna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Distal Stem I Region From G. Kaustophilus Glyqs T Box Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:59.7 occ:1.00 O6 A:G42 2.1 69.3 1.0 OP2 A:A40 2.3 55.9 1.0 C6 A:G42 3.2 59.0 1.0 P A:A40 3.6 60.0 1.0 OP1 A:G39 3.9 79.6 1.0 N1 A:G42 4.0 54.5 1.0 O5' A:A40 4.1 53.0 1.0 C5 A:G42 4.3 52.6 1.0 N7 A:A41 4.4 44.2 1.0 OP1 A:A40 4.4 64.3 1.0 P A:G39 4.6 79.6 1.0 OP2 A:G39 4.6 74.0 1.0 N7 A:G42 4.6 51.8 1.0 N7 A:A40 4.6 60.1 1.0 C8 A:A40 4.7 52.2 1.0 O5' A:G39 4.7 58.8 1.0 O3' A:G39 4.8 60.9 1.0 OP2 A:A41 5.0 52.1 1.0 C3' A:G39 5.0 58.7 1.0

Magnesium binding site 2 out of 2 in the Distal Stem I Region From G. Kaustophilus Glyqs T Box Rna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Distal Stem I Region From G. Kaustophilus Glyqs T Box Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg101 b:48.5 occ:1.00 O6 B:G42 2.1 53.2 1.0 OP2 B:A40 2.4 49.4 1.0 O B:HOH210 2.6 43.3 1.0 C6 B:G42 3.3 45.3 1.0 P B:A40 3.6 52.6 1.0 O5' B:A40 4.1 42.9 1.0 N1 B:G42 4.1 40.1 1.0 OP1 B:A40 4.2 57.6 1.0 C5 B:G42 4.3 41.6 1.0 N7 B:A41 4.5 44.5 1.0 OP1 B:G39 4.6 93.0 1.0 N7 B:G42 4.6 42.2 1.0 O5' B:G39 4.8 60.5 1.0 OP2 B:A41 4.8 47.5 1.0 O3' B:G39 4.9 58.8 1.0 C8 B:A40 4.9 41.6 1.0 N7 B:A40 5.0 45.8 1.0

J.C.Grigg, Y.Chen, F.J.Grundy, T.M.Henkin, L.Pollack, A.Ke. T Box Rna Decodes Both the Information Content and Geometry of Trna to Affect Gene Expression. Proc.Natl.Acad.Sci.Usa V. 110 7240 2013.
ISSN: ISSN 0027-8424
PubMed: 23589841
DOI: 10.1073/PNAS.1222214110