Magnesium in PDB 4jud: Crystal Structure of the SER26THR Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida

Enzymatic activity of Crystal Structure of the SER26THR Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida

All present enzymatic activity of Crystal Structure of the SER26THR Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida:
4.1.1.7;

Protein crystallography data

The structure of Crystal Structure of the SER26THR Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida, PDB code: 4jud was solved by M.J.Mcleish, H.R.Brodkin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	30.63 / 1.65
*Space group*	I 2 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	81.199, 96.015, 136.861, 90.00, 90.00, 90.00
*R / R_free (%)*	14.8 / 18.2

Other elements in 4jud:

The structure of Crystal Structure of the SER26THR Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the SER26THR Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida (pdb code 4jud). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the SER26THR Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida, PDB code: 4jud:

Magnesium binding site 1 out of 1 in 4jud

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Magnesium Binding Sites List in 4jud

Magnesium binding site 1 out of 1 in the Crystal Structure of the SER26THR Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the SER26THR Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
X:Mg602 b:18.1 occ:0.50	O	X:LEU118	2.5	16.2	1.0
	O	X:ARG120	2.5	18.0	1.0
	O	X:ASN117	2.7	17.1	1.0
	O	X:HOH761	3.2	20.0	0.5
	C	X:LEU118	3.2	15.0	1.0
	C	X:ARG120	3.6	17.0	1.0
	CA	X:LEU118	3.7	15.8	1.0
	C	X:ASN117	3.8	16.8	1.0
	N	X:ARG120	3.9	16.0	1.0
	CE	X:MET79	4.2	18.1	0.5
	N	X:PRO119	4.2	16.0	1.0
	N	X:LEU118	4.2	15.5	1.0
	CA	X:ARG120	4.3	16.3	1.0
	C	X:PRO119	4.4	16.1	1.0
	N	X:PRO121	4.6	16.6	1.0
	CB	X:ARG120	4.7	17.1	1.0
	CA	X:PRO119	4.7	17.4	1.0
	CD	X:PRO121	4.8	17.6	1.0

Reference:

H.R.Brodkin, F.H.Andrews, A.C.Milne, G.A.Petsko, D.Ringe, M.J.Mcleish. Crystal Structure of the SER26THR Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida To Be Published.

Page generated: Mon Aug 11 17:20:04 2025

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