Atomistry » Magnesium » PDB 4jty-4k5p » 4juf
Atomistry »
  Magnesium »
    PDB 4jty-4k5p »
      4juf »

Magnesium in PDB 4juf: Crystal Structure of HIS281ALA Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida

Enzymatic activity of Crystal Structure of HIS281ALA Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida

All present enzymatic activity of Crystal Structure of HIS281ALA Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida:
4.1.1.7;

Protein crystallography data

The structure of Crystal Structure of HIS281ALA Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida, PDB code: 4juf was solved by M.J.Mcleish, H.R.Brodkin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.43 / 2.15
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.505, 161.467, 175.854, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 21.1

Other elements in 4juf:

The structure of Crystal Structure of HIS281ALA Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida also contains other interesting chemical elements:

Calcium (Ca) 5 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of HIS281ALA Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida (pdb code 4juf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of HIS281ALA Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida, PDB code: 4juf:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4juf

Go back to Magnesium Binding Sites List in 4juf
Magnesium binding site 1 out of 2 in the Crystal Structure of HIS281ALA Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of HIS281ALA Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:19.8
occ:1.00
O A:ARG120 2.4 20.2 1.0
O A:LEU118 2.5 18.5 1.0
O C:LEU118 2.5 17.1 1.0
O C:ARG120 2.5 23.4 1.0
O A:ASN117 2.6 17.7 1.0
O C:ASN117 2.7 23.5 1.0
C A:LEU118 3.3 17.4 1.0
C C:LEU118 3.3 20.2 1.0
O C:HOH783 3.3 26.9 1.0
C A:ARG120 3.6 19.9 1.0
C C:ARG120 3.7 21.1 1.0
CA C:LEU118 3.8 20.5 1.0
C A:ASN117 3.8 21.5 1.0
C C:ASN117 3.8 20.6 1.0
N A:ARG120 3.8 19.3 1.0
CA A:LEU118 3.8 16.7 1.0
N C:ARG120 3.9 18.1 1.0
CA A:ARG120 4.2 16.6 1.0
N A:PRO119 4.2 15.4 1.0
CA C:ARG120 4.3 19.7 1.0
C A:PRO119 4.3 20.5 1.0
N C:LEU118 4.3 18.8 1.0
N C:PRO119 4.3 19.3 1.0
N A:LEU118 4.3 15.9 1.0
C C:PRO119 4.3 20.1 1.0
CE A:MET79 4.5 18.0 0.5
CB A:ARG120 4.5 17.1 1.0
CA A:PRO119 4.6 18.4 1.0
CB C:ARG120 4.6 19.8 1.0
CE C:MET79 4.6 19.8 0.5
CA C:PRO119 4.7 18.9 1.0
N A:PRO121 4.7 17.2 1.0
N C:PRO121 4.8 19.2 1.0
CD A:PRO121 4.9 16.2 1.0
O A:PRO119 4.9 18.8 1.0
CD C:PRO121 5.0 17.0 1.0
O C:PRO119 5.0 22.2 1.0

Magnesium binding site 2 out of 2 in 4juf

Go back to Magnesium Binding Sites List in 4juf
Magnesium binding site 2 out of 2 in the Crystal Structure of HIS281ALA Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of HIS281ALA Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:23.0
occ:1.00
O B:ARG120 2.5 18.6 1.0
O D:ARG120 2.5 20.6 1.0
O D:LEU118 2.5 18.2 1.0
O B:LEU118 2.5 17.0 1.0
O B:ASN117 2.7 19.9 1.0
O D:ASN117 2.7 22.1 1.0
O D:HOH703 3.1 19.6 1.0
C D:LEU118 3.2 19.1 1.0
C B:LEU118 3.3 18.7 1.0
C B:ARG120 3.6 19.8 1.0
C D:ARG120 3.6 21.1 1.0
CA D:LEU118 3.7 21.1 1.0
C B:ASN117 3.7 16.9 1.0
C D:ASN117 3.7 19.7 1.0
CA B:LEU118 3.8 16.4 1.0
N B:ARG120 3.9 17.3 1.0
N D:ARG120 3.9 15.9 1.0
CA D:ARG120 4.2 18.9 1.0
N D:LEU118 4.2 18.9 1.0
N B:LEU118 4.2 16.1 1.0
CA B:ARG120 4.2 23.8 1.0
N D:PRO119 4.2 20.4 1.0
N B:PRO119 4.2 17.5 1.0
C B:PRO119 4.3 19.9 1.0
C D:PRO119 4.3 19.8 1.0
CE D:MET79 4.5 18.9 0.5
CB D:ARG120 4.5 22.2 1.0
CE B:MET79 4.5 17.5 0.5
CB B:ARG120 4.6 20.3 1.0
CA D:PRO119 4.6 19.4 1.0
CA B:PRO119 4.6 18.1 1.0
N B:PRO121 4.7 19.8 1.0
N D:PRO121 4.7 18.8 1.0
CD B:PRO121 4.9 13.8 1.0
CD D:PRO121 4.9 15.7 1.0
O B:PRO119 5.0 18.8 1.0
O D:PRO119 5.0 18.0 1.0
CA B:ASN117 5.0 16.8 1.0

Reference:

H.R.Brodkin, F.H.Andrews, A.C.Milne, G.A.Petsko, D.Ringe, M.J.Mcleish. Crystal Structure of HIS281ALA Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida To Be Published.
Page generated: Mon Dec 14 19:01:13 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy