Magnesium in PDB 4jvs: Crystal Structure of Lepb Gap Domain From Legionella Drancourtii in Complex with RAB1-Gdp and ALF3

The structure of Crystal Structure of Lepb Gap Domain From Legionella Drancourtii in Complex with RAB1-Gdp and ALF3, PDB code: 4jvs was solved by Q.Yu, Q.Yao, D.-C.Wang, F.Shao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.96 / 2.78
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	95.561, 95.561, 197.724, 90.00, 90.00, 120.00
R / Rfree (%)	22.4 / 26.5

The structure of Crystal Structure of Lepb Gap Domain From Legionella Drancourtii in Complex with RAB1-Gdp and ALF3 also contains other interesting chemical elements:

Fluorine	(F)	3 atoms
Aluminium	(Al)	1 atom

The binding sites of Magnesium atom in the Crystal Structure of Lepb Gap Domain From Legionella Drancourtii in Complex with RAB1-Gdp and ALF3 (pdb code 4jvs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Lepb Gap Domain From Legionella Drancourtii in Complex with RAB1-Gdp and ALF3, PDB code: 4jvs:

Magnesium binding site 1 out of 1 in the Crystal Structure of Lepb Gap Domain From Legionella Drancourtii in Complex with RAB1-Gdp and ALF3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Lepb Gap Domain From Legionella Drancourtii in Complex with RAB1-Gdp and ALF3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:36.2 occ:1.00 F2 B:AF3401 1.9 35.7 1.0 OG1 B:THR43 2.0 38.9 1.0 O2B B:GDP400 2.1 36.2 1.0 OG B:SER25 2.7 36.9 1.0 CB B:THR43 2.8 39.6 1.0 PB B:GDP400 3.2 34.3 1.0 O1B B:GDP400 3.2 38.7 1.0 O B:THR67 3.2 37.7 1.0 O B:HOH502 3.3 41.3 1.0 AL B:AF3401 3.3 35.1 1.0 F1 B:AF3401 3.7 34.8 1.0 OD1 B:ASP66 3.8 38.6 1.0 N B:THR43 3.9 34.9 1.0 CG2 B:THR43 3.9 36.9 1.0 NZ B:LYS24 3.9 32.8 1.0 CA B:THR43 4.0 33.6 1.0 CE B:LYS24 4.0 32.6 1.0 O3B B:GDP400 4.1 29.2 1.0 CB B:SER25 4.1 32.3 1.0 C B:THR67 4.2 37.9 1.0 OD2 B:ASP66 4.3 38.1 1.0 CA B:ALA68 4.3 35.4 1.0 O3A B:GDP400 4.3 35.7 1.0 CG B:ASP66 4.4 38.3 1.0 N B:SER25 4.6 36.0 1.0 N B:ALA68 4.7 35.4 1.0 F3 B:AF3401 4.7 34.9 1.0 CB B:LYS24 4.7 34.5 1.0 O B:THR43 4.7 36.3 1.0 C B:THR43 4.8 35.4 1.0 CA B:SER25 4.9 35.7 1.0

Q.Yu, L.Hu, Q.Yao, Y.Zhu, N.Dong, D.-C.Wang, F.Shao. Structural Analyses of Legionella Lepb Reveal A New Gap Fold That Catalytically Mimics Eukaryotic Rasgap Cell Res. V. 23 775 2013.
ISSN: ISSN 1001-0602
PubMed: 23588383
DOI: 10.1038/CR.2013.54