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Magnesium in PDB 4k9p: Crystal Structure of the HIS281TYR/ALA460ILE Double Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida

Enzymatic activity of Crystal Structure of the HIS281TYR/ALA460ILE Double Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida

All present enzymatic activity of Crystal Structure of the HIS281TYR/ALA460ILE Double Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida:
4.1.1.7;

Protein crystallography data

The structure of Crystal Structure of the HIS281TYR/ALA460ILE Double Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida, PDB code: 4k9p was solved by H.R.Brodkin, M.J.Mcleish, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.14 / 2.24
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.769, 164.546, 175.881, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 20.1

Other elements in 4k9p:

The structure of Crystal Structure of the HIS281TYR/ALA460ILE Double Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the HIS281TYR/ALA460ILE Double Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida (pdb code 4k9p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the HIS281TYR/ALA460ILE Double Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida, PDB code: 4k9p:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4k9p

Go back to Magnesium Binding Sites List in 4k9p
Magnesium binding site 1 out of 2 in the Crystal Structure of the HIS281TYR/ALA460ILE Double Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the HIS281TYR/ALA460ILE Double Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg603

b:14.8
occ:1.00
 O A:LEU118 2.5 15.0 1.0
O A:ARG120 2.5 21.1 1.0
O A:ASN117 2.6 17.3 1.0
O C:ARG120 2.7 21.4 1.0
O C:LEU118 2.8 13.6 1.0
O C:ASN117 2.8 21.2 1.0
O A:HOH781 3.2 29.8 1.0
C A:LEU118 3.2 21.8 1.0
C C:LEU118 3.4 19.2 1.0
C A:ARG120 3.6 21.2 1.0
C A:ASN117 3.7 20.0 1.0
N A:ARG120 3.8 22.8 1.0
C C:ARG120 3.8 18.6 1.0
CA A:LEU118 3.8 19.2 1.0
CA C:LEU118 3.8 17.0 1.0
C C:ASN117 3.9 22.4 1.0
N C:ARG120 4.0 15.5 1.0
N A:PRO119 4.2 20.3 1.0
CA A:ARG120 4.2 20.2 1.0
C A:PRO119 4.2 21.2 1.0
N A:LEU118 4.2 18.8 1.0
N C:LEU118 4.3 18.5 1.0
CA C:ARG120 4.3 19.5 1.0
N C:PRO119 4.4 17.6 1.0
CB A:ARG120 4.5 17.9 1.0
C C:PRO119 4.5 19.9 1.0
CE C:MET79 4.5 18.2 0.5
CA A:PRO119 4.5 19.9 1.0
CB C:ARG120 4.6 17.2 1.0
CE A:MET79 4.6 20.7 0.5
N A:PRO121 4.8 24.0 1.0
O A:PRO119 4.9 20.5 1.0
CA C:PRO119 4.9 16.5 1.0
N C:PRO121 4.9 22.5 1.0
CA A:ASN117 5.0 18.5 1.0

Magnesium binding site 2 out of 2 in 4k9p

Go back to Magnesium Binding Sites List in 4k9p
Magnesium binding site 2 out of 2 in the Crystal Structure of the HIS281TYR/ALA460ILE Double Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the HIS281TYR/ALA460ILE Double Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg603

b:14.5
occ:1.00
 O B:ARG120 2.5 19.8 1.0
O B:LEU118 2.6 19.2 1.0
O B:ASN117 2.7 20.1 1.0
O D:ARG120 2.7 20.7 1.0
O D:LEU118 2.7 16.6 1.0
O D:ASN117 2.9 20.9 1.0
C B:LEU118 3.2 19.0 1.0
O D:HOH752 3.4 33.0 1.0
C D:LEU118 3.4 17.9 1.0
C B:ARG120 3.6 19.1 1.0
CA B:LEU118 3.7 20.6 1.0
C B:ASN117 3.8 21.9 1.0
N B:ARG120 3.8 17.3 1.0
C D:ARG120 3.8 19.3 1.0
CA D:LEU118 3.9 16.3 1.0
C D:ASN117 4.0 20.1 1.0
CA B:ARG120 4.1 20.9 1.0
N D:ARG120 4.1 15.2 1.0
N B:PRO119 4.2 16.7 1.0
N B:LEU118 4.2 17.0 1.0
C B:PRO119 4.2 21.1 1.0
CE B:MET79 4.3 17.5 0.5
CB B:ARG120 4.4 19.9 1.0
N D:PRO119 4.4 20.4 1.0
N D:LEU118 4.4 17.7 1.0
CA D:ARG120 4.5 22.6 1.0
C D:PRO119 4.5 18.9 1.0
CA B:PRO119 4.5 19.2 1.0
CE D:MET79 4.6 19.8 0.5
N B:PRO121 4.7 23.2 1.0
CB D:ARG120 4.7 24.1 1.0
CA D:PRO119 4.8 20.5 1.0
N D:PRO121 4.9 21.7 1.0
O B:PRO119 4.9 19.8 1.0

Reference:

H.R.Brodkin, F.H.Andrews, A.C.Milne, G.A.Petsko, D.Ringe, M.J.Mcleish. Crystal Structure of the HIS281TYR/ALA460ILE Double Mutant of Benzoylformate Decarboxylase From Pseudomonas Putida To Be Published.
Page generated: Sat Aug 17 03:30:56 2024

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