Magnesium in PDB 4kfr: Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Sulfate

The structure of Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Sulfate, PDB code: 4kfr was solved by L.J.Happonen, E.Oksanen, A.Goldman, T.Kajander, S.Butcher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.59 / 1.96
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	193.571, 59.604, 77.561, 90.00, 111.08, 90.00
R / Rfree (%)	17.8 / 21.6

The binding sites of Magnesium atom in the Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Sulfate (pdb code 4kfr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Sulfate, PDB code: 4kfr:

Magnesium binding site 1 out of 1 in the Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Sulfate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Genome Packaging Ntpase B204 From Sulfolobus Turreted Icosahedral Virus 2 in Complex with Sulfate within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg305 b:33.2 occ:1.00 O B:HOH539 2.1 42.8 1.0 O B:HOH496 2.1 32.2 1.0 O B:HOH522 2.1 38.4 1.0 O B:HOH495 2.2 35.9 1.0 O B:HOH494 2.2 28.3 1.0 O B:HOH487 2.2 34.8 1.0 OE1 B:GLU49 3.9 27.9 1.0 OD2 B:ASP103 4.1 28.0 1.0 O4 B:SO4301 4.1 21.0 1.0 O B:HOH492 4.2 27.2 1.0 O3 B:SO4301 4.2 22.8 1.0 OD1 B:ASP103 4.2 25.8 1.0 O B:HOH485 4.2 30.9 1.0 O B:HOH515 4.3 37.3 1.0 CG B:ASP103 4.6 24.9 1.0 O B:HOH521 4.8 24.3 1.0 S B:SO4301 4.8 22.6 1.0 O B:HOH517 4.9 52.7 1.0 CB B:SER18 4.9 24.2 1.0

L.J.Happonen, E.Oksanen, L.Liljeroos, A.Goldman, T.Kajander, S.J.Butcher. The Structure of the Ntpase That Powers Dna Packaging Into Sulfolobus Turreted Icosahedral Virus 2. J.Virol. V. 87 8388 2013.
ISSN: ISSN 0022-538X
PubMed: 23698307
DOI: 10.1128/JVI.00831-13