Magnesium in PDB 4kt0: Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Enzymatic activity of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
All present enzymatic activity of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803:
1.97.1.12;
Protein crystallography data
The structure of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803, PDB code: 4kt0
was solved by
Y.Mazor,
D.Nataf,
H.Toporik,
N.Nelson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.98 /
2.80
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
120.179,
173.308,
179.136,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.8 /
24.5
|
Other elements in 4kt0:
The structure of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
92;
Binding sites:
The binding sites of Magnesium atom in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
(pdb code 4kt0). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 92 binding sites of Magnesium where determined in the
Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803, PDB code: 4kt0:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 92 in 4kt0
Go back to
Magnesium Binding Sites List in 4kt0
Magnesium binding site 1 out
of 92 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1011
b:63.5
occ:1.00
|
MG
|
A:CL01011
|
0.0
|
63.5
|
1.0
|
ND
|
A:CL01011
|
2.1
|
83.3
|
1.0
|
NB
|
A:CL01011
|
2.1
|
71.9
|
1.0
|
NC
|
A:CL01011
|
2.1
|
57.2
|
1.0
|
NA
|
A:CL01011
|
2.3
|
79.2
|
1.0
|
NE2
|
A:HIS676
|
2.6
|
52.7
|
1.0
|
C4D
|
A:CL01011
|
3.0
|
73.1
|
1.0
|
C4B
|
A:CL01011
|
3.0
|
67.9
|
1.0
|
C1B
|
A:CL01011
|
3.1
|
73.2
|
1.0
|
C1C
|
A:CL01011
|
3.1
|
58.8
|
1.0
|
C1D
|
A:CL01011
|
3.2
|
69.2
|
1.0
|
C4A
|
A:CL01011
|
3.2
|
73.2
|
1.0
|
C4C
|
A:CL01011
|
3.2
|
57.4
|
1.0
|
C1A
|
A:CL01011
|
3.3
|
72.7
|
1.0
|
CHC
|
A:CL01011
|
3.4
|
68.0
|
1.0
|
CHB
|
A:CL01011
|
3.4
|
70.0
|
1.0
|
CBB
|
B:CLA1021
|
3.5
|
77.1
|
1.0
|
CD2
|
A:HIS676
|
3.5
|
55.5
|
1.0
|
CE1
|
A:HIS676
|
3.6
|
52.9
|
1.0
|
CHA
|
A:CL01011
|
3.6
|
69.3
|
1.0
|
CHD
|
A:CL01011
|
3.6
|
64.5
|
1.0
|
CHC
|
B:CLA1021
|
4.1
|
64.9
|
1.0
|
C4B
|
B:CLA1021
|
4.2
|
73.2
|
1.0
|
C3D
|
A:CL01011
|
4.2
|
73.8
|
1.0
|
C3B
|
B:CLA1021
|
4.2
|
72.8
|
1.0
|
CAB
|
B:CLA1021
|
4.3
|
71.6
|
1.0
|
C3B
|
A:CL01011
|
4.3
|
54.6
|
1.0
|
C2B
|
A:CL01011
|
4.4
|
65.9
|
1.0
|
C2D
|
A:CL01011
|
4.4
|
65.4
|
1.0
|
CZ
|
B:PHE617
|
4.4
|
62.7
|
1.0
|
C2C
|
A:CL01011
|
4.4
|
67.9
|
1.0
|
C3C
|
A:CL01011
|
4.5
|
71.8
|
1.0
|
C3A
|
A:CL01011
|
4.5
|
68.8
|
1.0
|
C2A
|
A:CL01011
|
4.6
|
60.3
|
1.0
|
ND1
|
A:HIS676
|
4.7
|
52.2
|
1.0
|
CG
|
A:HIS676
|
4.7
|
64.6
|
1.0
|
NB
|
B:CLA1021
|
4.8
|
76.1
|
1.0
|
C1C
|
B:CLA1021
|
4.8
|
65.4
|
1.0
|
C2B
|
B:CLA1021
|
4.9
|
65.4
|
1.0
|
|
Magnesium binding site 2 out
of 92 in 4kt0
Go back to
Magnesium Binding Sites List in 4kt0
Magnesium binding site 2 out
of 92 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1801
b:0.5
occ:1.00
|
MG
|
A:CLA1801
|
0.0
|
0.5
|
1.0
|
NB
|
A:CLA1801
|
2.1
|
0.3
|
1.0
|
ND
|
A:CLA1801
|
2.1
|
0.2
|
1.0
|
NC
|
A:CLA1801
|
2.2
|
0.0
|
1.0
|
NA
|
A:CLA1801
|
2.3
|
0.5
|
1.0
|
O5
|
A:LHG5003
|
2.9
|
0.5
|
1.0
|
C4D
|
A:CLA1801
|
3.0
|
0.9
|
1.0
|
C4B
|
A:CLA1801
|
3.0
|
0.9
|
1.0
|
C1B
|
A:CLA1801
|
3.1
|
0.5
|
1.0
|
C1C
|
A:CLA1801
|
3.1
|
0.8
|
1.0
|
C1D
|
A:CLA1801
|
3.2
|
0.6
|
1.0
|
C4A
|
A:CLA1801
|
3.2
|
0.5
|
1.0
|
C4C
|
A:CLA1801
|
3.2
|
0.6
|
1.0
|
C1A
|
A:CLA1801
|
3.2
|
0.1
|
1.0
|
CHC
|
A:CLA1801
|
3.4
|
0.7
|
1.0
|
CHB
|
A:CLA1801
|
3.5
|
0.8
|
1.0
|
CHA
|
A:CLA1801
|
3.6
|
0.8
|
1.0
|
CHD
|
A:CLA1801
|
3.6
|
0.3
|
1.0
|
O3
|
A:LHG5003
|
3.7
|
0.1
|
1.0
|
P
|
A:LHG5003
|
3.9
|
0.7
|
1.0
|
C3D
|
A:CLA1801
|
4.2
|
0.1
|
1.0
|
C3B
|
A:CLA1801
|
4.3
|
0.6
|
1.0
|
C3
|
A:LHG5003
|
4.3
|
0.5
|
1.0
|
C2B
|
A:CLA1801
|
4.4
|
0.1
|
1.0
|
C2D
|
A:CLA1801
|
4.4
|
0.3
|
1.0
|
C2C
|
A:CLA1801
|
4.5
|
0.5
|
1.0
|
C1
|
A:CLA1801
|
4.5
|
0.0
|
1.0
|
C3C
|
A:CLA1801
|
4.5
|
0.3
|
1.0
|
C3A
|
A:CLA1801
|
4.6
|
0.9
|
1.0
|
C2A
|
A:CLA1801
|
4.6
|
0.2
|
1.0
|
O6
|
A:LHG5003
|
4.7
|
0.8
|
1.0
|
C5
|
A:CLA1801
|
4.9
|
0.1
|
1.0
|
C2
|
A:CLA1801
|
5.0
|
0.2
|
1.0
|
CD
|
A:PRO331
|
5.0
|
0.9
|
1.0
|
|
Magnesium binding site 3 out
of 92 in 4kt0
Go back to
Magnesium Binding Sites List in 4kt0
Magnesium binding site 3 out
of 92 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1022
b:80.3
occ:1.00
|
MG
|
A:CLA1022
|
0.0
|
80.3
|
1.0
|
ND
|
A:CLA1022
|
2.1
|
68.0
|
1.0
|
NB
|
A:CLA1022
|
2.1
|
92.4
|
1.0
|
NC
|
A:CLA1022
|
2.1
|
64.1
|
1.0
|
NA
|
A:CLA1022
|
2.3
|
82.0
|
1.0
|
O
|
A:HOH9101
|
2.3
|
68.0
|
1.0
|
C4D
|
A:CLA1022
|
3.0
|
77.9
|
1.0
|
C4B
|
A:CLA1022
|
3.0
|
82.3
|
1.0
|
C1B
|
A:CLA1022
|
3.1
|
81.6
|
1.0
|
C1C
|
A:CLA1022
|
3.1
|
65.8
|
1.0
|
C1D
|
A:CLA1022
|
3.2
|
71.2
|
1.0
|
C4C
|
A:CLA1022
|
3.2
|
67.9
|
1.0
|
C4A
|
A:CLA1022
|
3.2
|
78.3
|
1.0
|
C1A
|
A:CLA1022
|
3.2
|
82.8
|
1.0
|
CHC
|
A:CLA1022
|
3.4
|
60.4
|
1.0
|
CHB
|
A:CLA1022
|
3.5
|
74.9
|
1.0
|
CHA
|
A:CLA1022
|
3.5
|
81.3
|
1.0
|
CBB
|
B:CLA1023
|
3.5
|
75.4
|
1.0
|
CHD
|
A:CLA1022
|
3.6
|
72.7
|
1.0
|
C3D
|
A:CLA1022
|
4.2
|
85.6
|
1.0
|
C3B
|
A:CLA1022
|
4.3
|
91.2
|
1.0
|
C2B
|
A:CLA1022
|
4.4
|
83.2
|
1.0
|
C2C
|
A:CLA1022
|
4.4
|
70.4
|
1.0
|
C2D
|
A:CLA1022
|
4.4
|
76.6
|
1.0
|
C3C
|
A:CLA1022
|
4.5
|
65.9
|
1.0
|
C20
|
A:CL01011
|
4.5
|
75.6
|
1.0
|
OD1
|
A:ASN600
|
4.5
|
68.8
|
1.0
|
C3A
|
A:CLA1022
|
4.5
|
79.7
|
1.0
|
C2A
|
A:CLA1022
|
4.6
|
72.3
|
1.0
|
CAB
|
B:CLA1023
|
4.6
|
76.4
|
1.0
|
CB
|
B:ALA655
|
4.7
|
54.7
|
1.0
|
C2
|
A:CL01011
|
4.9
|
55.7
|
1.0
|
ND2
|
A:ASN600
|
5.0
|
57.9
|
1.0
|
|
Magnesium binding site 4 out
of 92 in 4kt0
Go back to
Magnesium Binding Sites List in 4kt0
Magnesium binding site 4 out
of 92 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1101
b:71.0
occ:1.00
|
MG
|
A:CLA1101
|
0.0
|
71.0
|
1.0
|
NB
|
A:CLA1101
|
2.1
|
80.0
|
1.0
|
ND
|
A:CLA1101
|
2.1
|
67.2
|
1.0
|
NC
|
A:CLA1101
|
2.1
|
73.5
|
1.0
|
NA
|
A:CLA1101
|
2.3
|
78.8
|
1.0
|
NE2
|
A:HIS52
|
2.8
|
52.5
|
1.0
|
C4D
|
A:CLA1101
|
3.0
|
73.8
|
1.0
|
C4B
|
A:CLA1101
|
3.0
|
72.9
|
1.0
|
C1B
|
A:CLA1101
|
3.1
|
76.0
|
1.0
|
C1C
|
A:CLA1101
|
3.1
|
75.3
|
1.0
|
C1D
|
A:CLA1101
|
3.2
|
71.2
|
1.0
|
C4A
|
A:CLA1101
|
3.2
|
70.9
|
1.0
|
C4C
|
A:CLA1101
|
3.2
|
76.0
|
1.0
|
C1A
|
A:CLA1101
|
3.2
|
74.5
|
1.0
|
CHC
|
A:CLA1101
|
3.3
|
73.5
|
1.0
|
CHB
|
A:CLA1101
|
3.5
|
74.6
|
1.0
|
CHA
|
A:CLA1101
|
3.6
|
77.6
|
1.0
|
CHD
|
A:CLA1101
|
3.6
|
74.9
|
1.0
|
CD2
|
A:HIS52
|
3.6
|
59.5
|
1.0
|
CB
|
J:PRO12
|
3.7
|
60.8
|
1.0
|
CE1
|
A:HIS52
|
3.8
|
64.5
|
1.0
|
CG
|
J:PRO12
|
3.8
|
69.8
|
1.0
|
C3D
|
A:CLA1101
|
4.2
|
68.2
|
1.0
|
C3B
|
A:CLA1101
|
4.3
|
72.7
|
1.0
|
C2B
|
A:CLA1101
|
4.4
|
74.2
|
1.0
|
C2C
|
A:CLA1101
|
4.4
|
72.1
|
1.0
|
C2D
|
A:CLA1101
|
4.4
|
73.0
|
1.0
|
C3C
|
A:CLA1101
|
4.5
|
66.3
|
1.0
|
C3A
|
A:CLA1101
|
4.5
|
64.2
|
1.0
|
C2A
|
A:CLA1101
|
4.6
|
71.5
|
1.0
|
CD
|
J:PRO12
|
4.8
|
73.9
|
1.0
|
CG
|
A:HIS52
|
4.8
|
73.9
|
1.0
|
ND1
|
A:HIS52
|
4.9
|
74.2
|
1.0
|
|
Magnesium binding site 5 out
of 92 in 4kt0
Go back to
Magnesium Binding Sites List in 4kt0
Magnesium binding site 5 out
of 92 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1102
b:88.7
occ:1.00
|
MG
|
A:CLA1102
|
0.0
|
88.7
|
1.0
|
ND
|
A:CLA1102
|
2.1
|
86.4
|
1.0
|
NB
|
A:CLA1102
|
2.1
|
91.2
|
1.0
|
NC
|
A:CLA1102
|
2.1
|
76.3
|
1.0
|
NA
|
A:CLA1102
|
2.3
|
74.7
|
1.0
|
C4D
|
A:CLA1102
|
3.0
|
81.8
|
1.0
|
C4B
|
A:CLA1102
|
3.0
|
81.6
|
1.0
|
C1B
|
A:CLA1102
|
3.1
|
87.6
|
1.0
|
C1C
|
A:CLA1102
|
3.1
|
63.4
|
1.0
|
CE1
|
A:HIS56
|
3.1
|
67.7
|
1.0
|
C1D
|
A:CLA1102
|
3.2
|
82.6
|
1.0
|
C4A
|
A:CLA1102
|
3.2
|
77.3
|
1.0
|
C4C
|
A:CLA1102
|
3.2
|
84.2
|
1.0
|
C1A
|
A:CLA1102
|
3.2
|
79.1
|
1.0
|
CHC
|
A:CLA1102
|
3.4
|
70.8
|
1.0
|
CHB
|
A:CLA1102
|
3.5
|
84.2
|
1.0
|
CHA
|
A:CLA1102
|
3.5
|
78.0
|
1.0
|
CHD
|
A:CLA1102
|
3.6
|
90.0
|
1.0
|
NE2
|
A:HIS56
|
3.8
|
80.6
|
1.0
|
C9
|
A:CLA1109
|
4.0
|
82.9
|
1.0
|
ND1
|
A:HIS56
|
4.1
|
79.2
|
1.0
|
C8
|
A:CLA1109
|
4.1
|
91.4
|
1.0
|
C3D
|
A:CLA1102
|
4.2
|
77.3
|
1.0
|
C3B
|
A:CLA1102
|
4.3
|
83.2
|
1.0
|
C2B
|
A:CLA1102
|
4.4
|
83.6
|
1.0
|
C2D
|
A:CLA1102
|
4.4
|
67.3
|
1.0
|
C2C
|
A:CLA1102
|
4.4
|
72.0
|
1.0
|
C3C
|
A:CLA1102
|
4.5
|
73.3
|
1.0
|
C3A
|
A:CLA1102
|
4.5
|
69.7
|
1.0
|
C2A
|
A:CLA1102
|
4.6
|
73.9
|
1.0
|
C7
|
A:CLA1109
|
4.8
|
93.1
|
1.0
|
|
Magnesium binding site 6 out
of 92 in 4kt0
Go back to
Magnesium Binding Sites List in 4kt0
Magnesium binding site 6 out
of 92 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1103
b:80.5
occ:1.00
|
MG
|
A:CLA1103
|
0.0
|
80.5
|
1.0
|
NB
|
A:CLA1103
|
2.1
|
62.5
|
1.0
|
ND
|
A:CLA1103
|
2.1
|
87.5
|
1.0
|
NC
|
A:CLA1103
|
2.1
|
64.5
|
1.0
|
NA
|
A:CLA1103
|
2.3
|
80.3
|
1.0
|
NE2
|
A:HIS76
|
2.8
|
67.0
|
1.0
|
C4D
|
A:CLA1103
|
3.0
|
83.9
|
1.0
|
C4B
|
A:CLA1103
|
3.0
|
62.3
|
1.0
|
CMB
|
A:CLA1128
|
3.0
|
82.8
|
1.0
|
C1B
|
A:CLA1103
|
3.1
|
70.4
|
1.0
|
C1C
|
A:CLA1103
|
3.1
|
62.1
|
1.0
|
C1D
|
A:CLA1103
|
3.2
|
82.0
|
1.0
|
C4A
|
A:CLA1103
|
3.2
|
75.1
|
1.0
|
C4C
|
A:CLA1103
|
3.2
|
63.2
|
1.0
|
C1A
|
A:CLA1103
|
3.2
|
82.0
|
1.0
|
CHC
|
A:CLA1103
|
3.3
|
64.9
|
1.0
|
CD2
|
A:HIS76
|
3.4
|
67.0
|
1.0
|
CHB
|
A:CLA1103
|
3.5
|
69.7
|
1.0
|
CHA
|
A:CLA1103
|
3.6
|
81.3
|
1.0
|
CHD
|
A:CLA1103
|
3.6
|
69.7
|
1.0
|
CE1
|
A:HIS76
|
3.9
|
68.5
|
1.0
|
C3D
|
A:CLA1103
|
4.2
|
80.1
|
1.0
|
C3B
|
A:CLA1103
|
4.3
|
66.1
|
1.0
|
CG2
|
A:ILE72
|
4.3
|
68.3
|
1.0
|
C2B
|
A:CLA1103
|
4.4
|
66.5
|
1.0
|
C2D
|
A:CLA1103
|
4.4
|
79.9
|
1.0
|
C2C
|
A:CLA1103
|
4.4
|
61.7
|
1.0
|
C3C
|
A:CLA1103
|
4.5
|
68.1
|
1.0
|
C2B
|
A:CLA1128
|
4.5
|
78.1
|
1.0
|
C3A
|
A:CLA1103
|
4.5
|
79.8
|
1.0
|
C2A
|
A:CLA1103
|
4.6
|
81.0
|
1.0
|
CG
|
A:HIS76
|
4.6
|
68.6
|
1.0
|
ND1
|
A:HIS76
|
4.9
|
78.2
|
1.0
|
|
Magnesium binding site 7 out
of 92 in 4kt0
Go back to
Magnesium Binding Sites List in 4kt0
Magnesium binding site 7 out
of 92 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1104
b:77.0
occ:1.00
|
MG
|
A:CLA1104
|
0.0
|
77.0
|
1.0
|
NB
|
A:CLA1104
|
2.1
|
62.2
|
1.0
|
ND
|
A:CLA1104
|
2.1
|
75.4
|
1.0
|
NC
|
A:CLA1104
|
2.1
|
74.7
|
1.0
|
NA
|
A:CLA1104
|
2.3
|
59.6
|
1.0
|
NE2
|
A:HIS79
|
2.9
|
75.0
|
1.0
|
C4D
|
A:CLA1104
|
3.0
|
76.5
|
1.0
|
C4B
|
A:CLA1104
|
3.0
|
66.8
|
1.0
|
C1B
|
A:CLA1104
|
3.1
|
66.8
|
1.0
|
C1C
|
A:CLA1104
|
3.1
|
73.7
|
1.0
|
C4C
|
A:CLA1104
|
3.2
|
74.7
|
1.0
|
C1D
|
A:CLA1104
|
3.2
|
66.9
|
1.0
|
C4A
|
A:CLA1104
|
3.2
|
59.9
|
1.0
|
C1A
|
A:CLA1104
|
3.2
|
58.8
|
1.0
|
CHC
|
A:CLA1104
|
3.4
|
67.6
|
1.0
|
CHB
|
A:CLA1104
|
3.5
|
60.7
|
1.0
|
CHA
|
A:CLA1104
|
3.5
|
58.5
|
1.0
|
C16
|
A:CLA1104
|
3.6
|
64.9
|
1.0
|
CHD
|
A:CLA1104
|
3.6
|
66.5
|
1.0
|
C17
|
A:CLA1104
|
3.8
|
60.2
|
1.0
|
CE1
|
A:HIS79
|
3.8
|
86.9
|
1.0
|
CD2
|
A:HIS79
|
3.9
|
74.0
|
1.0
|
C3D
|
A:CLA1104
|
4.2
|
71.4
|
1.0
|
C3B
|
A:CLA1104
|
4.3
|
75.1
|
1.0
|
C2B
|
A:CLA1104
|
4.4
|
72.6
|
1.0
|
C2C
|
A:CLA1104
|
4.4
|
79.0
|
1.0
|
C2D
|
A:CLA1104
|
4.4
|
65.7
|
1.0
|
C3C
|
A:CLA1104
|
4.4
|
73.1
|
1.0
|
C20
|
A:CLA1104
|
4.5
|
70.5
|
1.0
|
C3A
|
A:CLA1104
|
4.5
|
72.1
|
1.0
|
C2A
|
A:CLA1104
|
4.6
|
70.9
|
1.0
|
C14
|
A:CLA1104
|
4.6
|
59.8
|
1.0
|
C18
|
A:CLA1104
|
4.7
|
68.6
|
1.0
|
C13
|
A:CLA1104
|
4.7
|
63.0
|
1.0
|
C15
|
A:CLA1104
|
4.8
|
73.7
|
1.0
|
CBB
|
A:CLA1127
|
5.0
|
75.7
|
1.0
|
ND1
|
A:HIS79
|
5.0
|
82.7
|
1.0
|
CBD
|
A:CLA1104
|
5.0
|
62.4
|
1.0
|
|
Magnesium binding site 8 out
of 92 in 4kt0
Go back to
Magnesium Binding Sites List in 4kt0
Magnesium binding site 8 out
of 92 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1105
b:85.2
occ:1.00
|
MG
|
A:CLA1105
|
0.0
|
85.2
|
1.0
|
NB
|
A:CLA1105
|
2.1
|
0.4
|
1.0
|
ND
|
A:CLA1105
|
2.1
|
93.0
|
1.0
|
NC
|
A:CLA1105
|
2.1
|
78.8
|
1.0
|
NA
|
A:CLA1105
|
2.3
|
85.5
|
1.0
|
NE2
|
A:HIS93
|
2.9
|
0.0
|
1.0
|
C4D
|
A:CLA1105
|
3.0
|
98.3
|
1.0
|
C4B
|
A:CLA1105
|
3.0
|
94.6
|
1.0
|
C1B
|
A:CLA1105
|
3.1
|
98.5
|
1.0
|
C1C
|
A:CLA1105
|
3.1
|
89.0
|
1.0
|
C1D
|
A:CLA1105
|
3.2
|
95.0
|
1.0
|
C4C
|
A:CLA1105
|
3.2
|
87.5
|
1.0
|
C4A
|
A:CLA1105
|
3.2
|
85.3
|
1.0
|
C1A
|
A:CLA1105
|
3.2
|
78.5
|
1.0
|
CHC
|
A:CLA1105
|
3.3
|
88.6
|
1.0
|
CD2
|
A:HIS93
|
3.5
|
0.5
|
1.0
|
CHB
|
A:CLA1105
|
3.5
|
90.6
|
1.0
|
CHA
|
A:CLA1105
|
3.5
|
91.9
|
1.0
|
CHD
|
A:CLA1105
|
3.6
|
97.6
|
1.0
|
CE1
|
A:HIS93
|
4.1
|
0.0
|
1.0
|
C3D
|
A:CLA1105
|
4.2
|
99.2
|
1.0
|
C3B
|
A:CLA1105
|
4.3
|
97.6
|
1.0
|
C2B
|
A:CLA1105
|
4.4
|
0.1
|
1.0
|
C2D
|
A:CLA1105
|
4.4
|
92.9
|
1.0
|
C2C
|
A:CLA1105
|
4.4
|
94.7
|
1.0
|
C3C
|
A:CLA1105
|
4.5
|
90.8
|
1.0
|
C2A
|
A:CLA1105
|
4.6
|
72.4
|
1.0
|
C3A
|
A:CLA1105
|
4.6
|
70.1
|
1.0
|
CG
|
A:HIS93
|
4.8
|
0.5
|
1.0
|
CBD
|
A:CLA1105
|
5.0
|
94.4
|
1.0
|
|
Magnesium binding site 9 out
of 92 in 4kt0
Go back to
Magnesium Binding Sites List in 4kt0
Magnesium binding site 9 out
of 92 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1106
b:82.2
occ:1.00
|
MG
|
A:CLA1106
|
0.0
|
82.2
|
1.0
|
NB
|
A:CLA1106
|
2.1
|
78.4
|
1.0
|
ND
|
A:CLA1106
|
2.1
|
76.2
|
1.0
|
NC
|
A:CLA1106
|
2.1
|
63.3
|
1.0
|
NA
|
A:CLA1106
|
2.3
|
90.5
|
1.0
|
OE1
|
A:GLN115
|
2.7
|
80.2
|
1.0
|
C4D
|
A:CLA1106
|
3.0
|
67.6
|
1.0
|
C4B
|
A:CLA1106
|
3.0
|
74.9
|
1.0
|
C1B
|
A:CLA1106
|
3.1
|
72.8
|
1.0
|
C1C
|
A:CLA1106
|
3.1
|
66.0
|
1.0
|
C1D
|
A:CLA1106
|
3.2
|
79.0
|
1.0
|
C4A
|
A:CLA1106
|
3.2
|
82.7
|
1.0
|
C4C
|
A:CLA1106
|
3.2
|
68.1
|
1.0
|
C1A
|
A:CLA1106
|
3.2
|
82.1
|
1.0
|
NE2
|
A:GLN115
|
3.3
|
68.4
|
1.0
|
CD
|
A:GLN115
|
3.3
|
74.6
|
1.0
|
CHC
|
A:CLA1106
|
3.3
|
75.9
|
1.0
|
CHB
|
A:CLA1106
|
3.5
|
76.1
|
1.0
|
CHA
|
A:CLA1106
|
3.5
|
72.5
|
1.0
|
CHD
|
A:CLA1106
|
3.6
|
73.5
|
1.0
|
C5
|
A:CLA1126
|
4.0
|
0.3
|
1.0
|
C3D
|
A:CLA1106
|
4.2
|
72.1
|
1.0
|
C3B
|
A:CLA1106
|
4.3
|
72.2
|
1.0
|
O1A
|
A:CLA1126
|
4.4
|
0.2
|
1.0
|
C2B
|
A:CLA1106
|
4.4
|
66.3
|
1.0
|
C2C
|
A:CLA1106
|
4.4
|
59.9
|
1.0
|
C2D
|
A:CLA1106
|
4.4
|
75.3
|
1.0
|
C3C
|
A:CLA1106
|
4.5
|
66.2
|
1.0
|
C3A
|
A:CLA1106
|
4.5
|
85.9
|
1.0
|
C2A
|
A:CLA1106
|
4.6
|
81.9
|
1.0
|
C3
|
A:CLA1126
|
4.6
|
94.1
|
1.0
|
C2
|
A:CLA1126
|
4.6
|
93.6
|
1.0
|
CG
|
A:GLN115
|
4.8
|
77.2
|
1.0
|
|
Magnesium binding site 10 out
of 92 in 4kt0
Go back to
Magnesium Binding Sites List in 4kt0
Magnesium binding site 10 out
of 92 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1107
b:67.4
occ:1.00
|
MG
|
A:CLA1107
|
0.0
|
67.4
|
1.0
|
NB
|
A:CLA1107
|
2.0
|
63.4
|
1.0
|
ND
|
A:CLA1107
|
2.1
|
69.7
|
1.0
|
NC
|
A:CLA1107
|
2.1
|
59.8
|
1.0
|
NA
|
A:CLA1107
|
2.3
|
61.4
|
1.0
|
OE1
|
A:GLN123
|
2.7
|
61.8
|
1.0
|
C4D
|
A:CLA1107
|
3.0
|
62.4
|
1.0
|
C4B
|
A:CLA1107
|
3.0
|
59.3
|
1.0
|
C1B
|
A:CLA1107
|
3.0
|
59.2
|
1.0
|
C1C
|
A:CLA1107
|
3.1
|
62.0
|
1.0
|
C1D
|
A:CLA1107
|
3.2
|
69.7
|
1.0
|
C4C
|
A:CLA1107
|
3.2
|
58.6
|
1.0
|
C4A
|
A:CLA1107
|
3.2
|
64.7
|
1.0
|
C1A
|
A:CLA1107
|
3.2
|
67.8
|
1.0
|
CHC
|
A:CLA1107
|
3.3
|
59.9
|
1.0
|
CHB
|
A:CLA1107
|
3.5
|
60.3
|
1.0
|
CHA
|
A:CLA1107
|
3.5
|
63.0
|
1.0
|
CHD
|
A:CLA1107
|
3.6
|
58.7
|
1.0
|
CD
|
A:GLN123
|
3.8
|
81.9
|
1.0
|
C3D
|
A:CLA1107
|
4.2
|
61.4
|
1.0
|
C3B
|
A:CLA1107
|
4.3
|
63.1
|
1.0
|
C14
|
A:CLA1126
|
4.3
|
70.4
|
1.0
|
C2B
|
A:CLA1107
|
4.3
|
63.3
|
1.0
|
NE2
|
A:GLN123
|
4.4
|
82.1
|
1.0
|
C2D
|
A:CLA1107
|
4.4
|
63.1
|
1.0
|
C2C
|
A:CLA1107
|
4.4
|
60.6
|
1.0
|
C3C
|
A:CLA1107
|
4.5
|
58.2
|
1.0
|
C15
|
A:CLA1126
|
4.5
|
81.5
|
1.0
|
C2A
|
A:CLA1107
|
4.5
|
68.7
|
1.0
|
C3A
|
A:CLA1107
|
4.6
|
66.9
|
1.0
|
CB
|
A:GLN123
|
4.8
|
71.5
|
1.0
|
CG
|
A:GLN123
|
4.9
|
82.6
|
1.0
|
|
Reference:
Y.Mazor,
D.Nataf,
H.Toporik,
N.Nelson.
Crystal Structures of Virus-Like Photosystem I Complexes From the Mesophilic Cyanobacterium Synechocystis Pcc 6803. Elife V. 3 01496 2014.
ISSN: ESSN 2050-084X
PubMed: 24473073
DOI: 10.7554/ELIFE.01496
Page generated: Sat Aug 17 03:57:25 2024
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