Magnesium in PDB 4ktz: Lactococcus Phage 67 Ruvc

The structure of Lactococcus Phage 67 Ruvc, PDB code: 4ktz was solved by J.B.Rafferty, V.Green, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	21.11 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	66.710, 66.970, 71.080, 90.00, 90.00, 90.00
R / Rfree (%)	20.2 / 25.4

The binding sites of Magnesium atom in the Lactococcus Phage 67 Ruvc (pdb code 4ktz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Lactococcus Phage 67 Ruvc, PDB code: 4ktz:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Lactococcus Phage 67 Ruvc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lactococcus Phage 67 Ruvc within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:43.1 occ:1.00 O A:HOH301 1.9 46.4 1.0 OD1 A:ASN8 2.0 27.2 1.0 O A:HOH302 2.1 40.4 1.0 O A:HOH374 2.2 29.4 1.0 OE1 A:GLU71 2.2 35.6 1.0 O A:HOH368 2.4 36.8 1.0 CG A:ASN8 3.1 24.1 1.0 CD A:GLU71 3.3 33.6 1.0 ND2 A:ASN8 3.5 24.2 1.0 OE2 A:GLU71 3.7 32.3 1.0 OD2 A:ASP149 4.3 24.3 1.0 CB A:ASN8 4.4 20.6 1.0 CG A:GLU71 4.5 28.3 1.0 O A:PHE9 4.7 23.9 1.0 CB A:GLU71 4.7 25.4 1.0 CA A:ASN8 4.8 20.1 1.0 O A:HOH310 4.8 18.2 1.0 C A:ASN8 4.9 20.7 1.0

Magnesium binding site 2 out of 3 in the Lactococcus Phage 67 Ruvc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Lactococcus Phage 67 Ruvc within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:33.3 occ:1.00 O A:HOH371 2.0 19.0 1.0 O A:HOH372 2.0 11.0 1.0 O A:HOH369 2.1 21.2 1.0 O A:HOH370 2.1 15.6 1.0 O A:HOH373 2.2 12.1 1.0 OG A:SER118 3.8 29.6 1.0 O A:HOH330 4.2 15.6 1.0 O A:HOH333 4.3 23.5 1.0 OE2 A:GLU127 4.3 29.5 1.0 O A:SER118 4.3 30.4 1.0 C A:SER118 4.9 31.5 1.0

Magnesium binding site 3 out of 3 in the Lactococcus Phage 67 Ruvc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Lactococcus Phage 67 Ruvc within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg201 b:39.5 occ:1.00 O B:HOH383 1.9 30.4 1.0 O B:HOH328 2.0 23.5 1.0 O B:HOH346 2.0 37.6 1.0 O B:HOH382 2.2 40.2 1.0 OE1 B:GLU71 2.2 31.7 1.0 OD1 B:ASN8 2.3 23.4 1.0 CG B:ASN8 3.3 20.5 1.0 CD B:GLU71 3.3 29.4 1.0 ND2 B:ASN8 3.7 23.9 1.0 OE2 B:GLU71 3.8 29.2 1.0 O B:HOH329 3.9 35.6 1.0 O B:HOH301 4.1 32.4 1.0 OD2 B:ASP149 4.4 28.2 1.0 CG B:GLU71 4.5 25.0 1.0 CB B:GLU71 4.6 22.1 1.0 CB B:ASN8 4.6 16.8 1.0 O B:PHE9 4.9 18.0 1.0 O B:HOH338 5.0 18.8 1.0

V.Green, F.A.Curtis, S.Sedelnikova, J.B.Rafferty, G.J.Sharples. Mutants of Phage BIL67 Ruvc with Enhanced Holliday Junction Binding Selectivity and Resolution Symmetry. Mol.Microbiol. V. 89 1240 2013.
ISSN: ISSN 0950-382X
PubMed: 23888987
DOI: 10.1111/MMI.12343