Magnesium in PDB 4kvw: Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium
Enzymatic activity of Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium
All present enzymatic activity of Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium:
4.2.3.9;
Protein crystallography data
The structure of Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium, PDB code: 4kvw
was solved by
M.Chen,
N.Al-Lami,
M.Janvier,
E.L.D'antonio,
J.A.Faraldos,
D.E.Cane,
R.K.Allemann,
D.W.Christianson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.00 /
2.10
|
Space group
|
P 31 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
124.393,
124.393,
202.857,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
19.4 /
22.9
|
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Magnesium atom in the Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium
(pdb code 4kvw). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the
Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium, PDB code: 4kvw:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 12 in 4kvw
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Magnesium Binding Sites List in 4kvw
Magnesium binding site 1 out
of 12 in the Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:21.0
occ:1.00
|
OD1
|
A:ASP84
|
2.1
|
16.8
|
1.0
|
O
|
A:HOH779
|
2.1
|
30.1
|
1.0
|
O3
|
A:POP401
|
2.1
|
24.6
|
1.0
|
O
|
A:HOH780
|
2.2
|
19.3
|
1.0
|
O
|
A:HOH777
|
2.3
|
17.4
|
1.0
|
O
|
A:HOH784
|
2.3
|
17.9
|
1.0
|
CG
|
A:ASP84
|
3.1
|
18.6
|
1.0
|
MG
|
A:MG403
|
3.2
|
20.8
|
1.0
|
OD2
|
A:ASP84
|
3.4
|
19.1
|
1.0
|
P1
|
A:POP401
|
3.4
|
19.6
|
1.0
|
O
|
A:HOH783
|
3.8
|
22.9
|
1.0
|
O2
|
A:POP401
|
3.8
|
20.1
|
1.0
|
O
|
A:HOH787
|
4.1
|
37.1
|
1.0
|
OD1
|
A:ASP172
|
4.2
|
25.3
|
1.0
|
OD2
|
A:ASP172
|
4.2
|
21.2
|
1.0
|
O
|
A:HOH776
|
4.2
|
24.4
|
1.0
|
NE2
|
A:GLN151
|
4.2
|
14.7
|
1.0
|
O
|
A:HOH778
|
4.2
|
29.1
|
1.0
|
O1
|
A:POP401
|
4.3
|
23.3
|
1.0
|
O
|
A:HOH785
|
4.3
|
19.3
|
1.0
|
CB
|
A:ASP84
|
4.4
|
19.0
|
1.0
|
O
|
A:POP401
|
4.5
|
19.7
|
1.0
|
CG
|
A:ASP172
|
4.6
|
22.3
|
1.0
|
O5
|
A:POP401
|
4.7
|
20.5
|
1.0
|
CG
|
A:GLN151
|
4.9
|
15.2
|
1.0
|
O
|
A:HOH786
|
4.9
|
23.6
|
1.0
|
O
|
A:HOH788
|
5.0
|
44.5
|
1.0
|
|
Magnesium binding site 2 out
of 12 in 4kvw
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Magnesium Binding Sites List in 4kvw
Magnesium binding site 2 out
of 12 in the Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg403
b:20.8
occ:1.00
|
O5
|
A:POP401
|
2.0
|
20.5
|
1.0
|
O
|
A:HOH785
|
2.0
|
19.3
|
1.0
|
O3
|
A:POP401
|
2.1
|
24.6
|
1.0
|
OD2
|
A:ASP84
|
2.2
|
19.1
|
1.0
|
O
|
A:HOH784
|
2.2
|
17.9
|
1.0
|
O
|
A:HOH786
|
2.2
|
23.6
|
1.0
|
CG
|
A:ASP84
|
3.1
|
18.6
|
1.0
|
P1
|
A:POP401
|
3.2
|
19.6
|
1.0
|
MG
|
A:MG402
|
3.2
|
21.0
|
1.0
|
P2
|
A:POP401
|
3.3
|
16.2
|
1.0
|
O
|
A:POP401
|
3.4
|
19.7
|
1.0
|
OD1
|
A:ASP84
|
3.4
|
16.8
|
1.0
|
O1
|
A:POP401
|
3.6
|
23.3
|
1.0
|
NZ
|
A:LYS220
|
3.9
|
20.4
|
1.0
|
OE2
|
A:GLU88
|
4.0
|
33.3
|
1.0
|
NH2
|
A:ARG308
|
4.2
|
15.0
|
1.0
|
O4
|
A:POP401
|
4.2
|
17.2
|
1.0
|
O
|
A:HOH777
|
4.3
|
17.4
|
1.0
|
O6
|
A:POP401
|
4.3
|
16.8
|
1.0
|
OE2
|
A:GLU221
|
4.3
|
19.5
|
1.0
|
O
|
A:HOH783
|
4.4
|
22.9
|
1.0
|
CB
|
A:ASP84
|
4.5
|
19.0
|
1.0
|
O2
|
A:POP401
|
4.5
|
20.1
|
1.0
|
O
|
A:HOH776
|
4.6
|
24.4
|
1.0
|
O
|
A:ASP84
|
4.6
|
20.9
|
1.0
|
OD1
|
A:ASP85
|
4.7
|
20.7
|
1.0
|
O
|
A:HOH671
|
4.8
|
23.5
|
1.0
|
CD
|
A:GLU88
|
4.8
|
34.2
|
1.0
|
O
|
A:HOH780
|
4.9
|
19.3
|
1.0
|
MG
|
A:MG404
|
4.9
|
18.6
|
1.0
|
C
|
A:ASP84
|
5.0
|
22.1
|
1.0
|
O
|
A:HOH779
|
5.0
|
30.1
|
1.0
|
|
Magnesium binding site 3 out
of 12 in 4kvw
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Magnesium Binding Sites List in 4kvw
Magnesium binding site 3 out
of 12 in the Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg404
b:18.6
occ:1.00
|
O1
|
A:POP401
|
2.1
|
23.3
|
1.0
|
O4
|
A:POP401
|
2.1
|
17.2
|
1.0
|
O
|
A:HOH775
|
2.1
|
14.9
|
1.0
|
OE2
|
A:GLU221
|
2.1
|
19.5
|
1.0
|
OD1
|
A:ASN213
|
2.2
|
18.0
|
1.0
|
OG
|
A:SER217
|
2.2
|
14.0
|
1.0
|
CB
|
A:SER217
|
3.1
|
16.9
|
1.0
|
CD
|
A:GLU221
|
3.2
|
27.4
|
1.0
|
CG
|
A:ASN213
|
3.2
|
19.4
|
1.0
|
P2
|
A:POP401
|
3.3
|
16.2
|
1.0
|
P1
|
A:POP401
|
3.4
|
19.6
|
1.0
|
O
|
A:POP401
|
3.6
|
19.7
|
1.0
|
ND2
|
A:ASN213
|
3.6
|
15.9
|
1.0
|
OE1
|
A:GLU221
|
3.7
|
21.0
|
1.0
|
NH1
|
A:ARG169
|
3.8
|
17.7
|
1.0
|
O
|
A:HOH776
|
3.9
|
24.4
|
1.0
|
O
|
A:ASN213
|
3.9
|
15.5
|
1.0
|
O5
|
A:POP401
|
3.9
|
20.5
|
1.0
|
O
|
A:HOH785
|
3.9
|
19.3
|
1.0
|
O2
|
A:POP401
|
4.2
|
20.1
|
1.0
|
C
|
A:ASN213
|
4.2
|
18.6
|
1.0
|
CG
|
A:GLU221
|
4.3
|
22.0
|
1.0
|
OD1
|
A:ASP214
|
4.4
|
18.7
|
1.0
|
CB
|
A:ASN213
|
4.5
|
15.4
|
1.0
|
O3
|
A:POP401
|
4.5
|
24.6
|
1.0
|
CA
|
A:SER217
|
4.5
|
16.9
|
1.0
|
O6
|
A:POP401
|
4.5
|
16.8
|
1.0
|
N
|
A:ASP214
|
4.6
|
17.1
|
1.0
|
CA
|
A:ASP214
|
4.7
|
17.4
|
1.0
|
O
|
A:HOH690
|
4.7
|
14.1
|
1.0
|
O
|
A:SER217
|
4.7
|
18.2
|
1.0
|
C
|
A:SER217
|
4.8
|
19.1
|
1.0
|
MG
|
A:MG403
|
4.9
|
20.8
|
1.0
|
CZ
|
A:ARG169
|
4.9
|
20.8
|
1.0
|
O
|
A:HOH689
|
4.9
|
31.6
|
1.0
|
CA
|
A:ASN213
|
5.0
|
18.8
|
1.0
|
|
Magnesium binding site 4 out
of 12 in 4kvw
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Magnesium Binding Sites List in 4kvw
Magnesium binding site 4 out
of 12 in the Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg402
b:19.1
occ:1.00
|
O
|
B:HOH815
|
2.0
|
18.8
|
1.0
|
OD1
|
B:ASP84
|
2.1
|
16.0
|
1.0
|
O
|
B:HOH807
|
2.1
|
23.9
|
1.0
|
O
|
B:HOH816
|
2.2
|
16.8
|
1.0
|
O2
|
B:POP401
|
2.2
|
17.0
|
1.0
|
O
|
B:HOH812
|
2.2
|
14.1
|
1.0
|
CG
|
B:ASP84
|
3.0
|
16.9
|
1.0
|
MG
|
B:MG403
|
3.2
|
12.5
|
1.0
|
OD2
|
B:ASP84
|
3.3
|
16.8
|
1.0
|
P1
|
B:POP401
|
3.3
|
16.8
|
1.0
|
O1
|
B:POP401
|
3.6
|
15.8
|
1.0
|
O
|
B:HOH805
|
3.6
|
23.3
|
1.0
|
O
|
B:HOH818
|
4.1
|
32.0
|
1.0
|
O
|
B:HOH817
|
4.2
|
20.1
|
1.0
|
OD2
|
B:ASP172
|
4.2
|
13.4
|
1.0
|
O
|
B:HOH806
|
4.2
|
36.2
|
1.0
|
OD1
|
B:ASP172
|
4.2
|
19.3
|
1.0
|
O
|
B:HOH811
|
4.2
|
26.7
|
1.0
|
NE2
|
B:GLN151
|
4.3
|
15.5
|
1.0
|
O
|
B:HOH821
|
4.3
|
13.2
|
1.0
|
O3
|
B:POP401
|
4.3
|
13.4
|
1.0
|
CB
|
B:ASP84
|
4.4
|
13.0
|
1.0
|
O
|
B:POP401
|
4.4
|
15.6
|
1.0
|
CG
|
B:ASP172
|
4.6
|
18.8
|
1.0
|
O6
|
B:POP401
|
4.7
|
16.9
|
1.0
|
O
|
B:HOH822
|
4.8
|
12.7
|
1.0
|
CAD
|
B:JF4406
|
4.9
|
28.2
|
1.0
|
NH2
|
B:ARG169
|
5.0
|
12.2
|
1.0
|
|
Magnesium binding site 5 out
of 12 in 4kvw
Go back to
Magnesium Binding Sites List in 4kvw
Magnesium binding site 5 out
of 12 in the Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg403
b:12.5
occ:1.00
|
O6
|
B:POP401
|
2.0
|
16.9
|
1.0
|
O
|
B:HOH821
|
2.0
|
13.2
|
1.0
|
O
|
B:HOH822
|
2.1
|
12.7
|
1.0
|
O2
|
B:POP401
|
2.1
|
17.0
|
1.0
|
OD2
|
B:ASP84
|
2.1
|
16.8
|
1.0
|
O
|
B:HOH812
|
2.1
|
14.1
|
1.0
|
CG
|
B:ASP84
|
3.1
|
16.9
|
1.0
|
MG
|
B:MG402
|
3.2
|
19.1
|
1.0
|
P2
|
B:POP401
|
3.3
|
16.2
|
1.0
|
P1
|
B:POP401
|
3.3
|
16.8
|
1.0
|
OD1
|
B:ASP84
|
3.4
|
16.0
|
1.0
|
O
|
B:POP401
|
3.5
|
15.6
|
1.0
|
NZ
|
B:LYS220
|
3.9
|
15.6
|
1.0
|
O
|
B:HOH811
|
3.9
|
26.7
|
1.0
|
O3
|
B:POP401
|
3.9
|
13.4
|
1.0
|
OE2
|
B:GLU88
|
4.0
|
35.7
|
1.0
|
NH2
|
B:ARG308
|
4.1
|
15.4
|
1.0
|
O5
|
B:POP401
|
4.2
|
15.8
|
1.0
|
O
|
B:HOH805
|
4.3
|
23.3
|
1.0
|
OE2
|
B:GLU221
|
4.3
|
20.0
|
1.0
|
O
|
B:HOH816
|
4.3
|
16.8
|
1.0
|
O4
|
B:POP401
|
4.4
|
15.5
|
1.0
|
CB
|
B:ASP84
|
4.5
|
13.0
|
1.0
|
O1
|
B:POP401
|
4.5
|
15.8
|
1.0
|
O
|
B:HOH817
|
4.6
|
20.1
|
1.0
|
OD1
|
B:ASP85
|
4.6
|
19.6
|
1.0
|
O
|
B:ASP84
|
4.6
|
20.1
|
1.0
|
O
|
B:HOH774
|
4.8
|
14.9
|
1.0
|
O
|
B:HOH807
|
4.8
|
23.9
|
1.0
|
CD
|
B:GLU88
|
4.8
|
34.9
|
1.0
|
MG
|
B:MG404
|
4.9
|
16.9
|
1.0
|
C
|
B:ASP84
|
4.9
|
18.0
|
1.0
|
O
|
B:HOH815
|
5.0
|
18.8
|
1.0
|
|
Magnesium binding site 6 out
of 12 in 4kvw
Go back to
Magnesium Binding Sites List in 4kvw
Magnesium binding site 6 out
of 12 in the Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg404
b:16.9
occ:1.00
|
OE2
|
B:GLU221
|
2.0
|
20.0
|
1.0
|
O
|
B:HOH810
|
2.0
|
11.2
|
1.0
|
O3
|
B:POP401
|
2.1
|
13.4
|
1.0
|
OG
|
B:SER217
|
2.2
|
12.6
|
1.0
|
O5
|
B:POP401
|
2.2
|
15.8
|
1.0
|
OD1
|
B:ASN213
|
2.3
|
19.6
|
1.0
|
CD
|
B:GLU221
|
3.0
|
24.0
|
1.0
|
CB
|
B:SER217
|
3.2
|
15.0
|
1.0
|
CG
|
B:ASN213
|
3.3
|
20.8
|
1.0
|
P1
|
B:POP401
|
3.4
|
16.8
|
1.0
|
P2
|
B:POP401
|
3.4
|
16.2
|
1.0
|
OE1
|
B:GLU221
|
3.5
|
21.2
|
1.0
|
O
|
B:POP401
|
3.6
|
15.6
|
1.0
|
ND2
|
B:ASN213
|
3.7
|
13.7
|
1.0
|
O
|
B:HOH817
|
3.8
|
20.1
|
1.0
|
NH1
|
B:ARG169
|
3.8
|
11.7
|
1.0
|
O
|
B:HOH821
|
3.9
|
13.2
|
1.0
|
O
|
B:ASN213
|
4.0
|
13.3
|
1.0
|
O6
|
B:POP401
|
4.0
|
16.9
|
1.0
|
CG
|
B:GLU221
|
4.2
|
21.4
|
1.0
|
O2
|
B:POP401
|
4.3
|
17.0
|
1.0
|
C
|
B:ASN213
|
4.3
|
15.2
|
1.0
|
OD1
|
B:ASP214
|
4.4
|
19.6
|
1.0
|
O1
|
B:POP401
|
4.4
|
15.8
|
1.0
|
CA
|
B:SER217
|
4.5
|
17.8
|
1.0
|
CB
|
B:ASN213
|
4.6
|
12.5
|
1.0
|
O4
|
B:POP401
|
4.6
|
15.5
|
1.0
|
N
|
B:ASP214
|
4.6
|
14.6
|
1.0
|
CA
|
B:ASP214
|
4.6
|
16.9
|
1.0
|
O
|
B:SER217
|
4.7
|
17.9
|
1.0
|
O
|
B:HOH572
|
4.8
|
13.1
|
1.0
|
C
|
B:SER217
|
4.8
|
18.9
|
1.0
|
CZ
|
B:ARG169
|
4.9
|
18.7
|
1.0
|
MG
|
B:MG403
|
4.9
|
12.5
|
1.0
|
O
|
B:HOH809
|
5.0
|
25.6
|
1.0
|
|
Magnesium binding site 7 out
of 12 in 4kvw
Go back to
Magnesium Binding Sites List in 4kvw
Magnesium binding site 7 out
of 12 in the Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg402
b:25.0
occ:1.00
|
O6
|
C:POP401
|
2.0
|
21.7
|
1.0
|
O2
|
C:POP401
|
2.1
|
21.7
|
1.0
|
O
|
C:HOH696
|
2.1
|
23.9
|
1.0
|
O
|
C:HOH695
|
2.1
|
25.0
|
1.0
|
O
|
C:HOH694
|
2.1
|
25.6
|
1.0
|
OD2
|
C:ASP84
|
2.1
|
28.3
|
1.0
|
MG
|
C:MG403
|
3.1
|
29.6
|
1.0
|
CG
|
C:ASP84
|
3.1
|
32.8
|
1.0
|
P1
|
C:POP401
|
3.3
|
26.3
|
1.0
|
P2
|
C:POP401
|
3.3
|
27.0
|
1.0
|
OD1
|
C:ASP84
|
3.4
|
31.1
|
1.0
|
O
|
C:POP401
|
3.5
|
29.9
|
1.0
|
O
|
C:HOH700
|
3.8
|
48.5
|
1.0
|
NZ
|
C:LYS220
|
3.8
|
25.1
|
1.0
|
O1
|
C:POP401
|
3.8
|
27.7
|
1.0
|
OE2
|
C:GLU88
|
3.9
|
51.2
|
1.0
|
NH2
|
C:ARG308
|
4.1
|
32.9
|
1.0
|
O4
|
C:POP401
|
4.3
|
30.3
|
1.0
|
O
|
C:HOH697
|
4.4
|
24.5
|
1.0
|
O5
|
C:POP401
|
4.4
|
23.5
|
1.0
|
CB
|
C:ASP84
|
4.5
|
22.9
|
1.0
|
O3
|
C:POP401
|
4.5
|
24.5
|
1.0
|
OE2
|
C:GLU221
|
4.5
|
33.3
|
1.0
|
OD1
|
C:ASP85
|
4.5
|
34.3
|
1.0
|
O
|
C:HOH692
|
4.5
|
24.9
|
1.0
|
O
|
C:ASP84
|
4.6
|
31.8
|
1.0
|
O
|
C:HOH701
|
4.6
|
30.3
|
1.0
|
O
|
C:HOH704
|
4.7
|
30.7
|
1.0
|
O
|
C:HOH693
|
4.7
|
30.4
|
1.0
|
CE
|
C:LYS220
|
4.9
|
31.7
|
1.0
|
CD
|
C:GLU88
|
4.9
|
41.5
|
1.0
|
C
|
C:ASP84
|
4.9
|
34.0
|
1.0
|
O
|
C:HOH547
|
5.0
|
35.6
|
1.0
|
|
Magnesium binding site 8 out
of 12 in 4kvw
Go back to
Magnesium Binding Sites List in 4kvw
Magnesium binding site 8 out
of 12 in the Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg403
b:29.6
occ:1.00
|
O
|
C:HOH701
|
2.0
|
30.3
|
1.0
|
O
|
C:HOH696
|
2.1
|
23.9
|
1.0
|
O2
|
C:POP401
|
2.1
|
21.7
|
1.0
|
O
|
C:HOH704
|
2.1
|
30.7
|
1.0
|
OD1
|
C:ASP84
|
2.2
|
31.1
|
1.0
|
O
|
C:HOH692
|
2.3
|
24.9
|
1.0
|
MG
|
C:MG402
|
3.1
|
25.0
|
1.0
|
CG
|
C:ASP84
|
3.1
|
32.8
|
1.0
|
P1
|
C:POP401
|
3.3
|
26.3
|
1.0
|
OD2
|
C:ASP84
|
3.3
|
28.3
|
1.0
|
O3
|
C:POP401
|
3.7
|
24.5
|
1.0
|
O
|
C:HOH697
|
3.8
|
24.5
|
1.0
|
O
|
C:HOH700
|
4.0
|
48.5
|
1.0
|
O
|
C:HOH705
|
4.1
|
35.6
|
1.0
|
OD2
|
C:ASP172
|
4.2
|
25.5
|
1.0
|
O
|
C:HOH693
|
4.2
|
30.4
|
1.0
|
O
|
C:HOH694
|
4.2
|
25.6
|
1.0
|
O1
|
C:POP401
|
4.2
|
27.7
|
1.0
|
OD1
|
C:ASP172
|
4.3
|
29.0
|
1.0
|
NE2
|
C:GLN151
|
4.3
|
21.6
|
1.0
|
O
|
C:POP401
|
4.4
|
29.9
|
1.0
|
CB
|
C:ASP84
|
4.5
|
22.9
|
1.0
|
CG
|
C:ASP172
|
4.6
|
31.0
|
1.0
|
O6
|
C:POP401
|
4.6
|
21.7
|
1.0
|
O
|
C:HOH695
|
4.8
|
25.0
|
1.0
|
NH2
|
C:ARG169
|
5.0
|
24.9
|
1.0
|
|
Magnesium binding site 9 out
of 12 in 4kvw
Go back to
Magnesium Binding Sites List in 4kvw
Magnesium binding site 9 out
of 12 in the Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg404
b:30.5
occ:1.00
|
O4
|
C:POP401
|
2.0
|
30.3
|
1.0
|
OD1
|
C:ASN213
|
2.1
|
23.8
|
1.0
|
OE2
|
C:GLU221
|
2.1
|
33.3
|
1.0
|
O
|
C:HOH699
|
2.1
|
25.0
|
1.0
|
O1
|
C:POP401
|
2.1
|
27.7
|
1.0
|
OG
|
C:SER217
|
2.3
|
25.8
|
1.0
|
CG
|
C:ASN213
|
3.1
|
26.1
|
1.0
|
CB
|
C:SER217
|
3.2
|
32.4
|
1.0
|
CD
|
C:GLU221
|
3.2
|
34.4
|
1.0
|
P2
|
C:POP401
|
3.3
|
27.0
|
1.0
|
P1
|
C:POP401
|
3.4
|
26.3
|
1.0
|
O
|
C:POP401
|
3.5
|
29.9
|
1.0
|
ND2
|
C:ASN213
|
3.6
|
29.1
|
1.0
|
OE1
|
C:GLU221
|
3.7
|
33.5
|
1.0
|
NH1
|
C:ARG169
|
3.8
|
25.0
|
1.0
|
O
|
C:ASN213
|
3.8
|
28.6
|
1.0
|
O6
|
C:POP401
|
3.9
|
21.7
|
1.0
|
O
|
C:HOH693
|
4.0
|
30.4
|
1.0
|
C
|
C:ASN213
|
4.2
|
29.8
|
1.0
|
O
|
C:HOH694
|
4.2
|
25.6
|
1.0
|
CG
|
C:GLU221
|
4.3
|
30.6
|
1.0
|
O3
|
C:POP401
|
4.3
|
24.5
|
1.0
|
CB
|
C:ASN213
|
4.4
|
20.4
|
1.0
|
O2
|
C:POP401
|
4.4
|
21.7
|
1.0
|
OD1
|
C:ASP214
|
4.4
|
32.7
|
1.0
|
O5
|
C:POP401
|
4.5
|
23.5
|
1.0
|
CA
|
C:SER217
|
4.5
|
25.1
|
1.0
|
N
|
C:ASP214
|
4.5
|
28.1
|
1.0
|
CA
|
C:ASP214
|
4.6
|
28.4
|
1.0
|
O
|
C:SER217
|
4.7
|
33.2
|
1.0
|
C
|
C:SER217
|
4.8
|
31.3
|
1.0
|
CA
|
C:ASN213
|
4.8
|
27.3
|
1.0
|
CZ
|
C:ARG169
|
4.9
|
30.3
|
1.0
|
OH
|
C:TYR309
|
5.0
|
33.1
|
1.0
|
O
|
C:HOH502
|
5.0
|
33.1
|
1.0
|
|
Magnesium binding site 10 out
of 12 in 4kvw
Go back to
Magnesium Binding Sites List in 4kvw
Magnesium binding site 10 out
of 12 in the Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Crystal Structure of Aspergillus Terreus Aristolochene Synthase Complexed with (3R,6R,9AR)-6,9A-Dimethyl-3-(Prop-1-En-2-Yl) Decahydroquinolizin-5-Ium within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg402
b:23.3
occ:1.00
|
O
|
D:HOH650
|
2.0
|
29.8
|
1.0
|
O
|
D:HOH646
|
2.0
|
35.9
|
1.0
|
O2
|
D:POP401
|
2.0
|
27.7
|
1.0
|
O
|
D:HOH649
|
2.1
|
21.6
|
1.0
|
O
|
D:HOH641
|
2.2
|
19.6
|
1.0
|
OD1
|
D:ASP84
|
2.2
|
23.8
|
1.0
|
MG
|
D:MG403
|
3.0
|
29.1
|
1.0
|
CG
|
D:ASP84
|
3.2
|
27.0
|
1.0
|
P1
|
D:POP401
|
3.3
|
28.4
|
1.0
|
OD2
|
D:ASP84
|
3.4
|
26.8
|
1.0
|
O3
|
D:POP401
|
3.6
|
27.9
|
1.0
|
O
|
D:HOH648
|
3.7
|
21.8
|
1.0
|
O
|
D:HOH645
|
4.0
|
37.0
|
1.0
|
OD2
|
D:ASP172
|
4.1
|
25.9
|
1.0
|
O
|
D:HOH639
|
4.2
|
28.6
|
1.0
|
O1
|
D:POP401
|
4.2
|
30.8
|
1.0
|
OD1
|
D:ASP172
|
4.2
|
30.0
|
1.0
|
O
|
D:HOH642
|
4.3
|
33.5
|
1.0
|
NE2
|
D:GLN151
|
4.3
|
23.0
|
1.0
|
O
|
D:HOH627
|
4.3
|
40.7
|
1.0
|
O
|
D:POP401
|
4.4
|
20.7
|
1.0
|
O
|
D:HOH593
|
4.5
|
41.9
|
1.0
|
CB
|
D:ASP84
|
4.5
|
25.0
|
1.0
|
CG
|
D:ASP172
|
4.6
|
33.1
|
1.0
|
O6
|
D:POP401
|
4.6
|
24.3
|
1.0
|
O
|
D:HOH637
|
4.9
|
22.8
|
1.0
|
|
Reference:
M.Chen,
N.Al-Lami,
M.Janvier,
E.L.D'antonio,
J.A.Faraldos,
D.E.Cane,
R.K.Allemann,
D.W.Christianson.
Mechanistic Insights From the Binding of Substrate and Carbocation Intermediate Analogues to Aristolochene Synthase. Biochemistry V. 52 5441 2013.
ISSN: ISSN 0006-2960
PubMed: 23905850
DOI: 10.1021/BI400691V
Page generated: Sat Aug 17 04:20:04 2024
|