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Magnesium in PDB 4kx3: Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Thymidine Monophosphate

Enzymatic activity of Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Thymidine Monophosphate

All present enzymatic activity of Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Thymidine Monophosphate:
3.1.3.5;

Protein crystallography data

The structure of Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Thymidine Monophosphate, PDB code: 4kx3 was solved by E.Bitto, C.A.Bingman, C.L.Grobosky, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.92 / 2.10
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 46.872, 46.872, 285.873, 90.00, 90.00, 90.00
R / Rfree (%) 15.3 / 21.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Thymidine Monophosphate (pdb code 4kx3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Thymidine Monophosphate, PDB code: 4kx3:

Magnesium binding site 1 out of 1 in 4kx3

Go back to Magnesium Binding Sites List in 4kx3
Magnesium binding site 1 out of 1 in the Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Thymidine Monophosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Thymidine Monophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:13.0
occ:1.00
 OP1 A:DT301 2.0 14.8 1.0
O A:HOH402 2.1 19.5 1.0
OD1 A:ASP238 2.1 20.5 1.0
O A:ASN51 2.2 15.4 1.0
O A:HOH401 2.2 17.4 1.0
OD2 A:ASP49 2.2 16.8 1.0
CG A:ASP49 3.1 16.0 1.0
CG A:ASP238 3.1 20.2 1.0
OD1 A:ASP49 3.3 17.2 1.0
OD2 A:ASP238 3.3 21.6 1.0
C A:ASN51 3.3 15.0 1.0
O A:HOH557 3.3 45.5 1.0
P A:DT301 3.4 17.2 1.0
OP3 A:DT301 4.0 14.6 1.0
CA A:ASN51 4.0 13.9 1.0
N A:ASN51 4.1 14.9 1.0
CB A:ASN51 4.1 15.4 1.0
OP2 A:DT301 4.2 13.3 1.0
OD2 A:ASP242 4.2 16.4 1.0
OG1 A:THR53 4.2 15.7 1.0
O A:HOH520 4.3 30.2 1.0
O A:HOH501 4.4 21.3 1.0
CB A:ASP49 4.4 15.0 1.0
N A:MET52 4.4 15.5 1.0
O5' A:DT301 4.5 19.6 1.0
CB A:ASP238 4.5 18.3 1.0
CB A:MET52 4.5 18.9 1.0
C A:PHE50 4.6 14.2 1.0
N A:THR53 4.7 14.0 1.0
O3' A:DT301 4.8 25.2 1.0
CA A:MET52 4.8 16.6 1.0
CG A:MET52 4.9 21.6 1.0
N A:ASP238 4.9 16.6 1.0
C A:MET52 4.9 15.1 1.0
N A:PHE50 5.0 14.4 1.0

Reference:

E.Bitto, C.A.Bingman, C.L.Grobosky. Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Thymidine Monophosphate To Be Published.
Page generated: Sat Aug 17 04:23:16 2024

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