Magnesium in PDB 4l6v: Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Enzymatic activity of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
All present enzymatic activity of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803:
1.97.1.12;
Protein crystallography data
The structure of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803, PDB code: 4l6v
was solved by
Y.Mazor,
D.Nataf,
H.Toporik,
N.Nelson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
3.80
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
214.619,
133.680,
219.846,
90.00,
111.14,
90.00
|
R / Rfree (%)
|
25.3 /
29.7
|
Other elements in 4l6v:
The structure of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
160;
Page 17, Binding sites: 161 -
170;
Page 18, Binding sites: 171 -
180;
Page 19, Binding sites: 181 -
190;
Page 20, Binding sites: 191 -
200;
Page 21, Binding sites: 201 -
210;
Page 22, Binding sites: 211 -
220;
Page 23, Binding sites: 221 -
230;
Page 24, Binding sites: 231 -
240;
Page 25, Binding sites: 241 -
250;
Page 26, Binding sites: 251 -
260;
Page 27, Binding sites: 261 -
270;
Page 28, Binding sites: 271 -
273;
Binding sites:
The binding sites of Magnesium atom in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
(pdb code 4l6v). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 273 binding sites of Magnesium where determined in the
Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803, PDB code: 4l6v:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 273 in 4l6v
Go back to
Magnesium Binding Sites List in 4l6v
Magnesium binding site 1 out
of 273 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1801
b:93.7
occ:1.00
|
MG
|
A:CLA1801
|
0.0
|
93.7
|
1.0
|
ND
|
A:CLA1801
|
2.1
|
95.6
|
1.0
|
NB
|
A:CLA1801
|
2.1
|
92.3
|
1.0
|
NC
|
A:CLA1801
|
2.1
|
94.5
|
1.0
|
NA
|
A:CLA1801
|
2.3
|
93.4
|
1.0
|
O5
|
A:LHG5003
|
2.9
|
0.3
|
1.0
|
C4D
|
A:CLA1801
|
3.0
|
96.0
|
1.0
|
C4B
|
A:CLA1801
|
3.0
|
92.0
|
1.0
|
C1B
|
A:CLA1801
|
3.1
|
91.5
|
1.0
|
C1C
|
A:CLA1801
|
3.1
|
94.0
|
1.0
|
C1D
|
A:CLA1801
|
3.2
|
96.6
|
1.0
|
C4A
|
A:CLA1801
|
3.2
|
92.5
|
1.0
|
C4C
|
A:CLA1801
|
3.2
|
95.6
|
1.0
|
C1A
|
A:CLA1801
|
3.2
|
94.2
|
1.0
|
CHC
|
A:CLA1801
|
3.3
|
92.8
|
1.0
|
CHB
|
A:CLA1801
|
3.5
|
91.6
|
1.0
|
CHA
|
A:CLA1801
|
3.5
|
95.5
|
1.0
|
CHD
|
A:CLA1801
|
3.6
|
96.7
|
1.0
|
C5
|
A:CLA1801
|
3.6
|
96.5
|
1.0
|
O3
|
A:LHG5003
|
3.6
|
0.3
|
1.0
|
P
|
A:LHG5003
|
3.8
|
0.1
|
1.0
|
C3
|
A:CLA1801
|
3.9
|
95.8
|
1.0
|
O6
|
A:LHG5003
|
4.2
|
0.9
|
1.0
|
C3D
|
A:CLA1801
|
4.2
|
97.3
|
1.0
|
C3
|
A:LHG5003
|
4.2
|
0.2
|
1.0
|
C3B
|
A:CLA1801
|
4.3
|
91.0
|
1.0
|
C6
|
A:CLA1801
|
4.3
|
98.0
|
1.0
|
C4
|
A:CLA1801
|
4.4
|
94.7
|
1.0
|
C2B
|
A:CLA1801
|
4.4
|
90.6
|
1.0
|
C2
|
A:CLA1801
|
4.4
|
96.1
|
1.0
|
C2D
|
A:CLA1801
|
4.4
|
97.8
|
1.0
|
C2C
|
A:CLA1801
|
4.4
|
94.6
|
1.0
|
C3C
|
A:CLA1801
|
4.5
|
95.8
|
1.0
|
C3A
|
A:CLA1801
|
4.6
|
92.6
|
1.0
|
C2A
|
A:CLA1801
|
4.6
|
93.8
|
1.0
|
C7
|
A:CLA1801
|
4.9
|
98.8
|
1.0
|
CD
|
A:PRO331
|
5.0
|
0.4
|
1.0
|
|
Magnesium binding site 2 out
of 273 in 4l6v
Go back to
Magnesium Binding Sites List in 4l6v
Magnesium binding site 2 out
of 273 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1237
b:83.0
occ:1.00
|
MG
|
A:CLA1237
|
0.0
|
83.0
|
1.0
|
NB
|
A:CLA1237
|
2.0
|
84.1
|
1.0
|
ND
|
A:CLA1237
|
2.1
|
82.1
|
1.0
|
NC
|
A:CLA1237
|
2.1
|
83.1
|
1.0
|
NA
|
A:CLA1237
|
2.3
|
82.9
|
1.0
|
C4D
|
A:CLA1237
|
3.0
|
81.8
|
1.0
|
C4B
|
A:CLA1237
|
3.0
|
84.6
|
1.0
|
C1C
|
A:CLA1237
|
3.1
|
83.7
|
1.0
|
C1B
|
A:CLA1237
|
3.1
|
84.5
|
1.0
|
C1D
|
A:CLA1237
|
3.2
|
81.8
|
1.0
|
C4A
|
A:CLA1237
|
3.2
|
83.6
|
1.0
|
C4C
|
A:CLA1237
|
3.2
|
82.8
|
1.0
|
C1A
|
A:CLA1237
|
3.2
|
82.5
|
1.0
|
CHC
|
A:CLA1237
|
3.3
|
84.4
|
1.0
|
CHB
|
A:CLA1237
|
3.5
|
84.3
|
1.0
|
CHA
|
A:CLA1237
|
3.5
|
81.9
|
1.0
|
CHD
|
A:CLA1237
|
3.6
|
82.2
|
1.0
|
C2
|
A:CLA1237
|
3.9
|
83.1
|
1.0
|
C1
|
A:CLA1237
|
4.1
|
82.6
|
1.0
|
C3D
|
A:CLA1237
|
4.2
|
81.3
|
1.0
|
C3B
|
A:CLA1237
|
4.3
|
85.4
|
1.0
|
O1A
|
A:CLA1237
|
4.3
|
83.5
|
1.0
|
C2B
|
A:CLA1237
|
4.4
|
85.4
|
1.0
|
C3
|
A:CLA1237
|
4.4
|
83.8
|
1.0
|
C2C
|
A:CLA1237
|
4.4
|
83.8
|
1.0
|
C2D
|
A:CLA1237
|
4.4
|
81.3
|
1.0
|
C3C
|
A:CLA1237
|
4.4
|
83.2
|
1.0
|
C3A
|
A:CLA1237
|
4.5
|
83.5
|
1.0
|
CGA
|
A:CLA1237
|
4.6
|
82.9
|
1.0
|
C2A
|
A:CLA1237
|
4.6
|
82.8
|
1.0
|
O2A
|
A:CLA1237
|
4.8
|
82.9
|
1.0
|
C5
|
A:CLA1237
|
4.8
|
84.3
|
1.0
|
|
Magnesium binding site 3 out
of 273 in 4l6v
Go back to
Magnesium Binding Sites List in 4l6v
Magnesium binding site 3 out
of 273 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1022
b:86.3
occ:1.00
|
MG
|
A:CLA1022
|
0.0
|
86.3
|
1.0
|
NB
|
A:CLA1022
|
2.1
|
85.1
|
1.0
|
ND
|
A:CLA1022
|
2.1
|
87.7
|
1.0
|
NC
|
A:CLA1022
|
2.1
|
85.8
|
1.0
|
NA
|
A:CLA1022
|
2.3
|
87.1
|
1.0
|
C4D
|
A:CLA1022
|
3.0
|
88.7
|
1.0
|
C4B
|
A:CLA1022
|
3.0
|
84.3
|
1.0
|
C1B
|
A:CLA1022
|
3.1
|
85.0
|
1.0
|
C1C
|
A:CLA1022
|
3.1
|
85.0
|
1.0
|
C1D
|
A:CLA1022
|
3.2
|
88.2
|
1.0
|
C4C
|
A:CLA1022
|
3.2
|
86.4
|
1.0
|
C4A
|
A:CLA1022
|
3.2
|
86.7
|
1.0
|
CBB
|
B:CLA1023
|
3.2
|
85.7
|
1.0
|
C1A
|
A:CLA1022
|
3.2
|
88.1
|
1.0
|
CHC
|
A:CLA1022
|
3.4
|
84.2
|
1.0
|
CHB
|
A:CLA1022
|
3.5
|
85.8
|
1.0
|
CHA
|
A:CLA1022
|
3.5
|
88.9
|
1.0
|
CHD
|
A:CLA1022
|
3.6
|
87.6
|
1.0
|
ND2
|
A:ASN600
|
3.8
|
0.7
|
1.0
|
C3D
|
A:CLA1022
|
4.2
|
89.7
|
1.0
|
C3B
|
A:CLA1022
|
4.3
|
83.7
|
1.0
|
C2B
|
A:CLA1022
|
4.4
|
84.2
|
1.0
|
C20
|
A:CLA1011
|
4.4
|
87.0
|
1.0
|
C2C
|
A:CLA1022
|
4.4
|
84.9
|
1.0
|
C2D
|
A:CLA1022
|
4.4
|
89.5
|
1.0
|
C3C
|
A:CLA1022
|
4.5
|
85.9
|
1.0
|
CAB
|
B:CLA1023
|
4.5
|
85.3
|
1.0
|
C3A
|
A:CLA1022
|
4.5
|
87.5
|
1.0
|
C2A
|
A:CLA1022
|
4.6
|
88.5
|
1.0
|
C2
|
A:CLA1011
|
4.6
|
90.7
|
1.0
|
CB
|
B:ALA655
|
4.8
|
98.5
|
1.0
|
C1
|
A:CLA1011
|
4.9
|
90.6
|
1.0
|
CBD
|
A:CLA1022
|
5.0
|
90.3
|
1.0
|
|
Magnesium binding site 4 out
of 273 in 4l6v
Go back to
Magnesium Binding Sites List in 4l6v
Magnesium binding site 4 out
of 273 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1101
b:0.5
occ:1.00
|
MG
|
A:CLA1101
|
0.0
|
0.5
|
1.0
|
NB
|
A:CLA1101
|
2.1
|
0.2
|
1.0
|
ND
|
A:CLA1101
|
2.1
|
0.8
|
1.0
|
NC
|
A:CLA1101
|
2.1
|
0.2
|
1.0
|
NA
|
A:CLA1101
|
2.3
|
0.6
|
1.0
|
NE2
|
A:HIS52
|
2.9
|
0.7
|
1.0
|
C4D
|
A:CLA1101
|
3.0
|
0.2
|
1.0
|
C4B
|
A:CLA1101
|
3.0
|
0.9
|
1.0
|
C1B
|
A:CLA1101
|
3.1
|
0.5
|
1.0
|
C1C
|
A:CLA1101
|
3.1
|
0.9
|
1.0
|
C1D
|
A:CLA1101
|
3.2
|
0.7
|
1.0
|
C4C
|
A:CLA1101
|
3.2
|
0.8
|
1.0
|
C4A
|
A:CLA1101
|
3.2
|
0.5
|
1.0
|
C1A
|
A:CLA1101
|
3.2
|
0.3
|
1.0
|
CHC
|
A:CLA1101
|
3.3
|
0.7
|
1.0
|
CHB
|
A:CLA1101
|
3.5
|
0.1
|
1.0
|
CHA
|
A:CLA1101
|
3.5
|
0.7
|
1.0
|
CHD
|
A:CLA1101
|
3.6
|
1.0
|
1.0
|
CE1
|
A:HIS52
|
3.7
|
0.7
|
1.0
|
C28
|
F:BCR4013
|
3.8
|
0.3
|
1.0
|
CD2
|
A:HIS52
|
3.9
|
0.6
|
1.0
|
C3D
|
A:CLA1101
|
4.2
|
0.6
|
1.0
|
C3B
|
A:CLA1101
|
4.3
|
0.9
|
1.0
|
C2B
|
A:CLA1101
|
4.4
|
0.6
|
1.0
|
C2D
|
A:CLA1101
|
4.4
|
0.2
|
1.0
|
C2C
|
A:CLA1101
|
4.4
|
0.8
|
1.0
|
C3C
|
A:CLA1101
|
4.5
|
0.0
|
1.0
|
C3A
|
A:CLA1101
|
4.6
|
0.5
|
1.0
|
C2A
|
A:CLA1101
|
4.6
|
0.8
|
1.0
|
C27
|
F:BCR4013
|
4.8
|
0.5
|
1.0
|
C29
|
F:BCR4013
|
4.9
|
0.4
|
1.0
|
ND1
|
A:HIS52
|
4.9
|
0.7
|
1.0
|
CBD
|
A:CLA1101
|
5.0
|
1.0
|
1.0
|
|
Magnesium binding site 5 out
of 273 in 4l6v
Go back to
Magnesium Binding Sites List in 4l6v
Magnesium binding site 5 out
of 273 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1102
b:0.1
occ:1.00
|
MG
|
A:CLA1102
|
0.0
|
0.1
|
1.0
|
ND
|
A:CLA1102
|
2.1
|
0.4
|
1.0
|
NB
|
A:CLA1102
|
2.1
|
0.0
|
1.0
|
NC
|
A:CLA1102
|
2.1
|
0.7
|
1.0
|
NA
|
A:CLA1102
|
2.3
|
0.8
|
1.0
|
NE2
|
A:HIS56
|
2.8
|
0.5
|
1.0
|
C4D
|
A:CLA1102
|
3.0
|
0.4
|
1.0
|
C4B
|
A:CLA1102
|
3.0
|
0.2
|
1.0
|
C1B
|
A:CLA1102
|
3.1
|
0.2
|
1.0
|
C1C
|
A:CLA1102
|
3.1
|
0.0
|
1.0
|
C1D
|
A:CLA1102
|
3.2
|
0.4
|
1.0
|
C4A
|
A:CLA1102
|
3.2
|
0.9
|
1.0
|
C4C
|
A:CLA1102
|
3.2
|
0.7
|
1.0
|
C1A
|
A:CLA1102
|
3.2
|
0.8
|
1.0
|
CHC
|
A:CLA1102
|
3.4
|
0.8
|
1.0
|
CHB
|
A:CLA1102
|
3.5
|
0.2
|
1.0
|
CHA
|
A:CLA1102
|
3.5
|
0.0
|
1.0
|
CHD
|
A:CLA1102
|
3.6
|
0.6
|
1.0
|
CE1
|
A:HIS56
|
3.7
|
0.2
|
1.0
|
CD2
|
A:HIS56
|
3.7
|
0.8
|
1.0
|
C7
|
A:CLA1109
|
3.8
|
0.9
|
1.0
|
C3D
|
A:CLA1102
|
4.2
|
0.0
|
1.0
|
C8
|
A:CLA1109
|
4.2
|
0.6
|
1.0
|
C3B
|
A:CLA1102
|
4.3
|
1.0
|
1.0
|
C2B
|
A:CLA1102
|
4.4
|
0.7
|
1.0
|
C5
|
A:CLA1109
|
4.4
|
0.4
|
1.0
|
C2D
|
A:CLA1102
|
4.4
|
0.5
|
1.0
|
C2C
|
A:CLA1102
|
4.4
|
0.5
|
1.0
|
C3C
|
A:CLA1102
|
4.5
|
1.0
|
1.0
|
C3A
|
A:CLA1102
|
4.5
|
0.9
|
1.0
|
C2A
|
A:CLA1102
|
4.6
|
0.6
|
1.0
|
C6
|
A:CLA1109
|
4.8
|
0.1
|
1.0
|
ND1
|
A:HIS56
|
4.8
|
0.7
|
1.0
|
C10
|
A:CLA1109
|
4.8
|
0.3
|
1.0
|
CG
|
A:HIS56
|
4.8
|
1.0
|
1.0
|
CBB
|
A:CLA1103
|
5.0
|
0.9
|
1.0
|
|
Magnesium binding site 6 out
of 273 in 4l6v
Go back to
Magnesium Binding Sites List in 4l6v
Magnesium binding site 6 out
of 273 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1103
b:98.8
occ:1.00
|
MG
|
A:CLA1103
|
0.0
|
98.8
|
1.0
|
NB
|
A:CLA1103
|
2.1
|
0.2
|
1.0
|
ND
|
A:CLA1103
|
2.1
|
97.0
|
1.0
|
NC
|
A:CLA1103
|
2.1
|
98.1
|
1.0
|
NA
|
A:CLA1103
|
2.3
|
99.1
|
1.0
|
NE2
|
A:HIS76
|
2.8
|
1.0
|
1.0
|
C4D
|
A:CLA1103
|
3.0
|
96.8
|
1.0
|
C4B
|
A:CLA1103
|
3.0
|
0.7
|
1.0
|
C1B
|
A:CLA1103
|
3.1
|
0.1
|
1.0
|
C1C
|
A:CLA1103
|
3.1
|
98.8
|
1.0
|
CMB
|
A:CLA1128
|
3.1
|
0.2
|
1.0
|
C4A
|
A:CLA1103
|
3.2
|
0.1
|
1.0
|
C1D
|
A:CLA1103
|
3.2
|
96.2
|
1.0
|
C4C
|
A:CLA1103
|
3.2
|
97.2
|
1.0
|
C1A
|
A:CLA1103
|
3.2
|
98.5
|
1.0
|
CHC
|
A:CLA1103
|
3.3
|
0.1
|
1.0
|
CD2
|
A:HIS76
|
3.4
|
0.5
|
1.0
|
CHB
|
A:CLA1103
|
3.5
|
0.1
|
1.0
|
CHA
|
A:CLA1103
|
3.6
|
97.4
|
1.0
|
CHD
|
A:CLA1103
|
3.6
|
96.2
|
1.0
|
CE1
|
A:HIS76
|
3.7
|
0.9
|
1.0
|
CG2
|
A:ILE72
|
4.2
|
0.2
|
1.0
|
C3D
|
A:CLA1103
|
4.2
|
96.0
|
1.0
|
C3B
|
A:CLA1103
|
4.3
|
0.1
|
1.0
|
C2B
|
A:CLA1103
|
4.4
|
0.4
|
1.0
|
C2C
|
A:CLA1103
|
4.4
|
98.4
|
1.0
|
C2D
|
A:CLA1103
|
4.4
|
95.5
|
1.0
|
C3C
|
A:CLA1103
|
4.5
|
97.3
|
1.0
|
CG
|
A:HIS76
|
4.5
|
0.4
|
1.0
|
C2B
|
A:CLA1128
|
4.5
|
0.9
|
1.0
|
C3A
|
A:CLA1103
|
4.5
|
0.4
|
1.0
|
C2A
|
A:CLA1103
|
4.6
|
99.3
|
1.0
|
ND1
|
A:HIS76
|
4.7
|
0.3
|
1.0
|
|
Magnesium binding site 7 out
of 273 in 4l6v
Go back to
Magnesium Binding Sites List in 4l6v
Magnesium binding site 7 out
of 273 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1104
b:1.0
occ:1.00
|
MG
|
A:CLA1104
|
0.0
|
1.0
|
1.0
|
ND
|
A:CLA1104
|
2.1
|
0.1
|
1.0
|
NB
|
A:CLA1104
|
2.1
|
99.4
|
1.0
|
NC
|
A:CLA1104
|
2.1
|
1.0
|
1.0
|
NA
|
A:CLA1104
|
2.3
|
99.6
|
1.0
|
NE2
|
A:HIS79
|
3.0
|
0.9
|
1.0
|
C4D
|
A:CLA1104
|
3.0
|
0.0
|
1.0
|
C4B
|
A:CLA1104
|
3.0
|
99.7
|
1.0
|
C1B
|
A:CLA1104
|
3.1
|
98.0
|
1.0
|
C1C
|
A:CLA1104
|
3.1
|
0.8
|
1.0
|
C1D
|
A:CLA1104
|
3.2
|
0.8
|
1.0
|
C4C
|
A:CLA1104
|
3.2
|
0.7
|
1.0
|
C4A
|
A:CLA1104
|
3.2
|
98.2
|
1.0
|
C1A
|
A:CLA1104
|
3.2
|
0.0
|
1.0
|
CHC
|
A:CLA1104
|
3.4
|
0.2
|
1.0
|
CHB
|
A:CLA1104
|
3.5
|
97.5
|
1.0
|
CHA
|
A:CLA1104
|
3.5
|
0.7
|
1.0
|
CHD
|
A:CLA1104
|
3.6
|
0.6
|
1.0
|
C16
|
A:CLA1104
|
3.6
|
98.1
|
1.0
|
CE1
|
A:HIS79
|
3.7
|
0.1
|
1.0
|
CD2
|
A:HIS79
|
4.1
|
0.8
|
1.0
|
C18
|
A:CLA1104
|
4.2
|
0.6
|
1.0
|
C3D
|
A:CLA1104
|
4.2
|
0.5
|
1.0
|
C17
|
A:CLA1104
|
4.2
|
99.4
|
1.0
|
C3B
|
A:CLA1104
|
4.3
|
98.3
|
1.0
|
C2B
|
A:CLA1104
|
4.4
|
97.2
|
1.0
|
C2D
|
A:CLA1104
|
4.4
|
0.9
|
1.0
|
C2C
|
A:CLA1104
|
4.4
|
0.3
|
1.0
|
C3C
|
A:CLA1104
|
4.4
|
0.6
|
1.0
|
C3A
|
A:CLA1104
|
4.5
|
97.5
|
1.0
|
C2A
|
A:CLA1104
|
4.6
|
98.9
|
1.0
|
C20
|
A:CLA1104
|
4.7
|
0.6
|
1.0
|
C15
|
A:CLA1104
|
4.7
|
96.6
|
1.0
|
ND1
|
A:HIS79
|
4.9
|
0.1
|
1.0
|
|
Magnesium binding site 8 out
of 273 in 4l6v
Go back to
Magnesium Binding Sites List in 4l6v
Magnesium binding site 8 out
of 273 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1105
b:0.9
occ:1.00
|
MG
|
A:CLA1105
|
0.0
|
0.9
|
1.0
|
ND
|
A:CLA1105
|
2.1
|
0.3
|
1.0
|
NB
|
A:CLA1105
|
2.1
|
0.9
|
1.0
|
NC
|
A:CLA1105
|
2.1
|
0.3
|
1.0
|
NA
|
A:CLA1105
|
2.3
|
0.2
|
1.0
|
NE2
|
A:HIS93
|
2.9
|
0.6
|
1.0
|
C4D
|
A:CLA1105
|
3.0
|
0.9
|
1.0
|
C4B
|
A:CLA1105
|
3.0
|
0.4
|
1.0
|
C1B
|
A:CLA1105
|
3.1
|
0.4
|
1.0
|
C1C
|
A:CLA1105
|
3.1
|
0.2
|
1.0
|
C1D
|
A:CLA1105
|
3.2
|
0.3
|
1.0
|
C4C
|
A:CLA1105
|
3.2
|
0.6
|
1.0
|
C4A
|
A:CLA1105
|
3.2
|
0.0
|
1.0
|
C1A
|
A:CLA1105
|
3.2
|
0.4
|
1.0
|
CHC
|
A:CLA1105
|
3.3
|
0.4
|
1.0
|
CHB
|
A:CLA1105
|
3.5
|
0.4
|
1.0
|
CHA
|
A:CLA1105
|
3.5
|
0.4
|
1.0
|
CHD
|
A:CLA1105
|
3.6
|
0.5
|
1.0
|
CD2
|
A:HIS93
|
3.6
|
0.9
|
1.0
|
CE1
|
A:HIS93
|
3.9
|
0.5
|
1.0
|
C10
|
A:CLA1107
|
3.9
|
0.1
|
1.0
|
C8
|
A:CLA1107
|
4.1
|
0.8
|
1.0
|
C3D
|
A:CLA1105
|
4.2
|
0.9
|
1.0
|
C3B
|
A:CLA1105
|
4.3
|
0.7
|
1.0
|
C2B
|
A:CLA1105
|
4.4
|
0.6
|
1.0
|
C2C
|
A:CLA1105
|
4.4
|
0.9
|
1.0
|
C2D
|
A:CLA1105
|
4.4
|
0.5
|
1.0
|
C3C
|
A:CLA1105
|
4.5
|
0.9
|
1.0
|
C3A
|
A:CLA1105
|
4.6
|
0.8
|
1.0
|
C2A
|
A:CLA1105
|
4.6
|
0.0
|
1.0
|
C7
|
A:CLA1107
|
4.8
|
0.6
|
1.0
|
CG
|
A:HIS93
|
4.8
|
0.4
|
1.0
|
ND1
|
A:HIS93
|
4.9
|
0.4
|
1.0
|
CBD
|
A:CLA1105
|
5.0
|
0.3
|
1.0
|
|
Magnesium binding site 9 out
of 273 in 4l6v
Go back to
Magnesium Binding Sites List in 4l6v
Magnesium binding site 9 out
of 273 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1106
b:0.1
occ:1.00
|
MG
|
A:CLA1106
|
0.0
|
0.1
|
1.0
|
ND
|
A:CLA1106
|
2.1
|
0.1
|
1.0
|
NB
|
A:CLA1106
|
2.1
|
0.5
|
1.0
|
NC
|
A:CLA1106
|
2.1
|
0.7
|
1.0
|
NA
|
A:CLA1106
|
2.3
|
0.5
|
1.0
|
OE1
|
A:GLN115
|
2.8
|
0.1
|
1.0
|
C4D
|
A:CLA1106
|
3.0
|
0.5
|
1.0
|
C4B
|
A:CLA1106
|
3.0
|
0.0
|
1.0
|
C1B
|
A:CLA1106
|
3.1
|
0.9
|
1.0
|
C1C
|
A:CLA1106
|
3.1
|
0.7
|
1.0
|
C1D
|
A:CLA1106
|
3.2
|
0.5
|
1.0
|
C4A
|
A:CLA1106
|
3.2
|
0.2
|
1.0
|
C4C
|
A:CLA1106
|
3.2
|
0.1
|
1.0
|
C1A
|
A:CLA1106
|
3.2
|
0.6
|
1.0
|
CHC
|
A:CLA1106
|
3.3
|
0.7
|
1.0
|
NE2
|
A:GLN115
|
3.4
|
1.0
|
1.0
|
CHB
|
A:CLA1106
|
3.5
|
0.4
|
1.0
|
CD
|
A:GLN115
|
3.5
|
1.0
|
1.0
|
CHA
|
A:CLA1106
|
3.5
|
0.7
|
1.0
|
CHD
|
A:CLA1106
|
3.6
|
1.0
|
1.0
|
C3D
|
A:CLA1106
|
4.2
|
0.6
|
1.0
|
C3B
|
A:CLA1106
|
4.3
|
0.4
|
1.0
|
C2B
|
A:CLA1106
|
4.4
|
0.3
|
1.0
|
C2C
|
A:CLA1106
|
4.4
|
0.9
|
1.0
|
C2D
|
A:CLA1106
|
4.4
|
0.5
|
1.0
|
C3C
|
A:CLA1106
|
4.5
|
0.8
|
1.0
|
O1A
|
A:CLA1126
|
4.5
|
0.4
|
1.0
|
C3A
|
A:CLA1106
|
4.5
|
0.0
|
1.0
|
C2A
|
A:CLA1106
|
4.6
|
0.8
|
1.0
|
C5
|
A:CLA1126
|
4.6
|
0.7
|
1.0
|
C2
|
A:CLA1126
|
4.7
|
0.9
|
1.0
|
C3
|
A:CLA1126
|
4.8
|
0.8
|
1.0
|
CG
|
A:GLN115
|
5.0
|
0.6
|
1.0
|
O1A
|
A:CLA1106
|
5.0
|
0.1
|
1.0
|
CBD
|
A:CLA1106
|
5.0
|
0.8
|
1.0
|
|
Magnesium binding site 10 out
of 273 in 4l6v
Go back to
Magnesium Binding Sites List in 4l6v
Magnesium binding site 10 out
of 273 in the Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Crystal Structure of A Virus Like Photosystem I From the Cyanobacterium Synechocystis Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1107
b:0.4
occ:1.00
|
MG
|
A:CLA1107
|
0.0
|
0.4
|
1.0
|
NB
|
A:CLA1107
|
2.0
|
0.5
|
1.0
|
ND
|
A:CLA1107
|
2.1
|
0.0
|
1.0
|
NC
|
A:CLA1107
|
2.1
|
0.9
|
1.0
|
NA
|
A:CLA1107
|
2.3
|
0.7
|
1.0
|
OE1
|
A:GLN123
|
2.9
|
0.4
|
1.0
|
C4D
|
A:CLA1107
|
3.0
|
0.6
|
1.0
|
C4B
|
A:CLA1107
|
3.0
|
0.2
|
1.0
|
C1B
|
A:CLA1107
|
3.1
|
0.7
|
1.0
|
C1C
|
A:CLA1107
|
3.1
|
0.1
|
1.0
|
C4A
|
A:CLA1107
|
3.2
|
0.8
|
1.0
|
C1D
|
A:CLA1107
|
3.2
|
0.3
|
1.0
|
C4C
|
A:CLA1107
|
3.2
|
0.0
|
1.0
|
C1A
|
A:CLA1107
|
3.2
|
0.5
|
1.0
|
CHC
|
A:CLA1107
|
3.3
|
0.1
|
1.0
|
CHB
|
A:CLA1107
|
3.5
|
0.7
|
1.0
|
CHA
|
A:CLA1107
|
3.5
|
0.5
|
1.0
|
CHD
|
A:CLA1107
|
3.6
|
0.2
|
1.0
|
CD
|
A:GLN123
|
3.7
|
0.2
|
1.0
|
C15
|
A:CLA1126
|
3.8
|
0.5
|
1.0
|
NE2
|
A:GLN123
|
4.0
|
0.9
|
1.0
|
C3D
|
A:CLA1107
|
4.2
|
0.4
|
1.0
|
C3B
|
A:CLA1107
|
4.3
|
0.3
|
1.0
|
C2B
|
A:CLA1107
|
4.4
|
0.0
|
1.0
|
C2C
|
A:CLA1107
|
4.4
|
0.2
|
1.0
|
C2D
|
A:CLA1107
|
4.4
|
0.7
|
1.0
|
C3C
|
A:CLA1107
|
4.4
|
0.8
|
1.0
|
C3A
|
A:CLA1107
|
4.5
|
0.3
|
1.0
|
C2A
|
A:CLA1107
|
4.6
|
0.6
|
1.0
|
C14
|
A:CLA1126
|
4.7
|
0.8
|
1.0
|
C16
|
A:CLA1126
|
4.8
|
0.1
|
1.0
|
C13
|
A:CLA1126
|
4.8
|
0.4
|
1.0
|
CBD
|
A:CLA1107
|
5.0
|
0.2
|
1.0
|
CG
|
A:GLN123
|
5.0
|
0.1
|
1.0
|
|
Reference:
Y.Mazor,
D.Nataf,
H.Toporik,
N.Nelson.
Crystal Structures of Virus-Like Photosystem I Complexes From the Mesophilic Cyanobacterium Synechocystis Pcc 6803. Elife V. 3 01496 2014.
ISSN: ESSN 2050-084X
PubMed: 24473073
DOI: 10.7554/ELIFE.01496
Page generated: Sat Aug 17 04:27:02 2024
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