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Magnesium in PDB 4l7w: Crystal Structure Mutant H77A of Human Hd Domain-Containing Protein 2, Genomics Consortium (Nesg) Target HR6723

Protein crystallography data

The structure of Crystal Structure Mutant H77A of Human Hd Domain-Containing Protein 2, Genomics Consortium (Nesg) Target HR6723, PDB code: 4l7w was solved by A.Kuzin, M.Su, A.Yakunin, N.Beloglazova, J.Seetharaman, M.Maglaqui, R.Xiao, D.Lee, G.Brown, R.Flick, J.K.Everett, T.B.Acton, G.T.Montelione, J.F.Hunt, L.Tong, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.69 / 2.31
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 71.380, 71.380, 199.308, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 22.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure Mutant H77A of Human Hd Domain-Containing Protein 2, Genomics Consortium (Nesg) Target HR6723 (pdb code 4l7w). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Crystal Structure Mutant H77A of Human Hd Domain-Containing Protein 2, Genomics Consortium (Nesg) Target HR6723, PDB code: 4l7w:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 4l7w

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Magnesium binding site 1 out of 5 in the Crystal Structure Mutant H77A of Human Hd Domain-Containing Protein 2, Genomics Consortium (Nesg) Target HR6723


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure Mutant H77A of Human Hd Domain-Containing Protein 2, Genomics Consortium (Nesg) Target HR6723 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:43.1
occ:1.00
OD1 A:ASP86 2.1 41.4 1.0
MG A:MG304 2.1 53.9 1.0
OE2 A:GLU81 2.2 48.4 1.0
MG A:MG303 2.3 55.1 1.0
MG A:MG305 2.3 57.0 1.0
MG A:MG302 2.3 58.6 1.0
CD A:GLU81 3.1 46.3 1.0
CG A:ASP86 3.1 41.4 1.0
OE1 A:GLU81 3.3 43.4 1.0
OD2 A:ASP86 3.8 44.9 1.0
O A:ILE87 4.1 45.2 1.0
O A:HOH421 4.1 47.0 1.0
CB A:ASP86 4.1 35.1 1.0
O A:HOH414 4.1 41.8 1.0
NH1 A:ARG32 4.1 41.1 1.0
OD2 A:ASP78 4.1 40.1 1.0
CA A:ASP86 4.2 38.1 1.0
O A:HOH433 4.2 58.5 1.0
OD1 A:ASP78 4.3 41.4 1.0
CG A:ASP78 4.3 41.2 1.0
N A:ILE87 4.4 44.5 1.0
CG A:GLU81 4.4 41.3 1.0
C A:ASP86 4.5 40.9 1.0
O A:HOH411 4.8 42.4 1.0
C A:ILE87 5.0 44.6 1.0

Magnesium binding site 2 out of 5 in 4l7w

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Magnesium binding site 2 out of 5 in the Crystal Structure Mutant H77A of Human Hd Domain-Containing Protein 2, Genomics Consortium (Nesg) Target HR6723


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure Mutant H77A of Human Hd Domain-Containing Protein 2, Genomics Consortium (Nesg) Target HR6723 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:58.6
occ:1.00
MG A:MG301 2.3 43.1 1.0
O A:HOH433 2.7 58.5 1.0
MG A:MG305 2.8 57.0 1.0
NH1 A:ARG32 3.1 41.1 1.0
OD1 A:ASP86 3.2 41.4 1.0
MG A:MG304 3.3 53.9 1.0
MG A:MG303 3.4 55.1 1.0
O A:HOH411 3.8 42.4 1.0
O A:HOH410 3.9 38.6 1.0
CG A:ASP86 4.1 41.4 1.0
O A:ILE87 4.2 45.2 1.0
OD2 A:ASP86 4.2 44.9 1.0
CZ A:ARG32 4.4 37.8 1.0
OE2 A:GLU81 4.4 48.4 1.0
O A:HOH438 4.5 59.9 1.0
OD2 A:ASP78 4.9 40.1 1.0
NH2 A:ARG32 5.0 35.0 1.0

Magnesium binding site 3 out of 5 in 4l7w

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Magnesium binding site 3 out of 5 in the Crystal Structure Mutant H77A of Human Hd Domain-Containing Protein 2, Genomics Consortium (Nesg) Target HR6723


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure Mutant H77A of Human Hd Domain-Containing Protein 2, Genomics Consortium (Nesg) Target HR6723 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:55.1
occ:1.00
MG A:MG301 2.3 43.1 1.0
OE1 A:GLU81 2.5 43.4 1.0
OD2 A:ASP78 2.7 40.1 1.0
OE2 A:GLU81 2.9 48.4 1.0
MG A:MG305 3.0 57.0 1.0
OD1 A:ASP86 3.0 41.4 1.0
CD A:GLU81 3.0 46.3 1.0
NH1 A:ARG32 3.1 41.1 1.0
CG A:ASP86 3.3 41.4 1.0
CG A:ASP78 3.3 41.2 1.0
MG A:MG302 3.4 58.6 1.0
OD2 A:ASP86 3.5 44.9 1.0
CD A:ARG32 3.7 32.1 1.0
OD1 A:ASP78 3.9 41.4 1.0
CB A:ASP78 4.1 43.8 1.0
CG1 A:VAL46 4.1 35.7 1.0
CZ A:ARG32 4.1 37.8 1.0
CB A:ASP86 4.2 35.1 1.0
CG2 A:VAL46 4.2 35.0 1.0
MG A:MG304 4.3 53.9 1.0
NE A:ARG32 4.4 34.9 1.0
CD2 A:HIS49 4.5 37.3 1.0
CG A:GLU81 4.5 41.3 1.0
CB A:VAL46 4.7 39.9 1.0
O A:HOH433 4.8 58.5 1.0
CA A:ASP86 4.9 38.1 1.0
O A:HOH411 4.9 42.4 1.0

Magnesium binding site 4 out of 5 in 4l7w

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Magnesium binding site 4 out of 5 in the Crystal Structure Mutant H77A of Human Hd Domain-Containing Protein 2, Genomics Consortium (Nesg) Target HR6723


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure Mutant H77A of Human Hd Domain-Containing Protein 2, Genomics Consortium (Nesg) Target HR6723 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg304

b:53.9
occ:1.00
MG A:MG301 2.1 43.1 1.0
O A:ILE87 2.7 45.2 1.0
OE2 A:GLU81 3.0 48.4 1.0
OD1 A:ASP86 3.0 41.4 1.0
O A:HOH414 3.1 41.8 1.0
MG A:MG305 3.2 57.0 1.0
MG A:MG302 3.3 58.6 1.0
N A:ILE87 3.4 44.5 1.0
NZ A:LYS98 3.6 56.2 1.0
CE A:LYS98 3.6 60.9 1.0
O A:HOH421 3.7 47.0 1.0
C A:ILE87 3.7 44.6 1.0
CA A:ILE87 4.0 47.3 1.0
CD A:GLU81 4.0 46.3 1.0
C A:ASP86 4.1 40.9 1.0
CG A:ASP86 4.2 41.4 1.0
CB A:ILE87 4.2 51.7 1.0
MG A:MG303 4.3 55.1 1.0
CA A:ASP86 4.4 38.1 1.0
OE1 A:GLU81 4.7 43.4 1.0
CG A:GLU81 4.9 41.3 1.0
N A:ALA88 4.9 42.5 1.0
CB A:ASP86 4.9 35.1 1.0
O A:HOH433 4.9 58.5 1.0

Magnesium binding site 5 out of 5 in 4l7w

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Magnesium binding site 5 out of 5 in the Crystal Structure Mutant H77A of Human Hd Domain-Containing Protein 2, Genomics Consortium (Nesg) Target HR6723


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure Mutant H77A of Human Hd Domain-Containing Protein 2, Genomics Consortium (Nesg) Target HR6723 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg305

b:57.0
occ:1.00
MG A:MG301 2.3 43.1 1.0
OD1 A:ASP78 2.7 41.4 1.0
MG A:MG302 2.8 58.6 1.0
OE2 A:GLU81 3.0 48.4 1.0
O A:HOH433 3.0 58.5 1.0
MG A:MG303 3.0 55.1 1.0
OD2 A:ASP78 3.1 40.1 1.0
CG A:ASP78 3.2 41.2 1.0
MG A:MG304 3.2 53.9 1.0
O A:HOH421 3.5 47.0 1.0
O A:HOH425 3.8 49.6 1.0
CD A:GLU81 4.0 46.3 1.0
OD1 A:ASP86 4.3 41.4 1.0
NH1 A:ARG32 4.3 41.1 1.0
OE1 A:GLU81 4.5 43.4 1.0
CB A:ASP78 4.6 43.8 1.0

Reference:

A.Kuzin, M.Su, A.Yakunin, N.Beloglazova, J.Seetharaman, M.Maglaqui, R.Xiao, D.Lee, G.Brown, R.Flick, J.K.Everett, T.B.Acton, G.T.Montelione, J.F.Hunt, L.Tong, Northeast Structural Genomics Consortium (Nesg). Northeast Structural Genomics Consortium Target HR6723 To Be Published.
Page generated: Mon Dec 14 19:05:53 2020

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