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Magnesium in PDB 4lem: Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis

Enzymatic activity of Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis

All present enzymatic activity of Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis:
1.5.1.12;

Protein crystallography data

The structure of Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis, PDB code: 4lem was solved by T.Lagautriere, G.Bashiri, E.N.Baker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.01 / 2.27
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 164.299, 164.299, 259.114, 90.00, 90.00, 120.00
R / Rfree (%) 14.8 / 20.4

Other elements in 4lem:

The structure of Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis also contains other interesting chemical elements:

Cobalt (Co) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis (pdb code 4lem). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis, PDB code: 4lem:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 4lem

Go back to Magnesium Binding Sites List in 4lem
Magnesium binding site 1 out of 3 in the Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg602

b:43.9
occ:1.00
 O C:VAL391 2.3 40.3 1.0
O C:ALA388 2.4 32.6 1.0
O C:ALA385 2.6 25.9 1.0
O C:LYS386 2.7 22.4 1.0
C C:LYS386 3.2 24.9 1.0
C C:ALA388 3.5 31.7 1.0
O C:HOH807 3.5 32.5 1.0
C C:VAL391 3.5 37.8 1.0
CA C:LYS386 3.7 27.1 1.0
C C:ALA385 3.7 24.3 1.0
N C:ALA388 3.8 30.5 1.0
C C:GLY387 4.1 31.9 1.0
N C:GLY387 4.1 26.3 1.0
CA C:ALA388 4.2 32.7 1.0
N C:LYS386 4.2 25.4 1.0
CA C:VAL391 4.4 37.2 1.0
N C:THR392 4.4 37.8 1.0
N C:VAL391 4.4 47.0 1.0
N C:ALA389 4.5 36.2 1.0
CB C:VAL391 4.5 38.5 1.0
CA C:THR392 4.5 40.5 1.0
CA C:GLY387 4.5 28.2 1.0
O C:GLY387 4.7 32.9 1.0
CA C:ALA389 4.8 40.7 1.0
CB C:ALA388 4.8 32.1 1.0
O C:HOH1019 4.9 42.0 1.0
C C:ALA389 5.0 34.4 1.0
CA C:ALA385 5.0 24.4 1.0

Magnesium binding site 2 out of 3 in 4lem

Go back to Magnesium Binding Sites List in 4lem
Magnesium binding site 2 out of 3 in the Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg602

b:49.2
occ:1.00
 O D:VAL391 2.2 39.1 1.0
O D:ALA388 2.5 47.6 1.0
O D:ALA385 2.6 31.2 1.0
O D:LYS386 2.7 41.7 1.0
O D:HOH828 2.8 38.0 1.0
C D:LYS386 3.4 42.5 1.0
C D:VAL391 3.5 36.6 1.0
C D:ALA388 3.5 44.4 1.0
CA D:LYS386 3.7 42.4 1.0
C D:ALA385 3.7 34.6 1.0
N D:ALA388 4.1 43.2 1.0
N D:LYS386 4.2 34.2 1.0
CA D:VAL391 4.4 38.3 1.0
N D:ALA389 4.4 49.3 1.0
N D:THR392 4.4 35.8 1.0
CA D:THR392 4.4 36.2 1.0
CA D:ALA388 4.4 37.9 1.0
N D:VAL391 4.4 39.5 1.0
N D:GLY387 4.5 41.8 1.0
CB D:VAL391 4.5 39.0 1.0
CA D:ALA389 4.5 48.7 1.0
C D:GLY387 4.7 46.3 1.0
N D:VAL393 4.8 32.0 1.0
C D:ALA389 4.8 46.8 1.0
O D:ALA389 4.9 47.0 1.0

Magnesium binding site 3 out of 3 in 4lem

Go back to Magnesium Binding Sites List in 4lem
Magnesium binding site 3 out of 3 in the Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg601

b:52.2
occ:1.00
 O F:ALA388 2.2 42.4 1.0
O F:VAL391 2.3 50.5 1.0
O F:ALA385 2.5 36.1 1.0
O F:LYS386 2.8 41.9 1.0
O F:HOH795 2.8 42.6 1.0
C F:LYS386 3.3 41.4 1.0
C F:VAL391 3.4 45.4 1.0
C F:ALA388 3.4 46.5 1.0
C F:ALA385 3.6 36.4 1.0
CA F:LYS386 3.7 42.1 1.0
N F:ALA388 3.8 45.5 1.0
N F:GLY387 4.1 40.0 1.0
CA F:ALA388 4.1 47.0 1.0
C F:GLY387 4.1 44.8 1.0
CA F:VAL391 4.2 46.7 1.0
N F:LYS386 4.2 37.0 1.0
N F:VAL391 4.3 50.1 1.0
CB F:VAL391 4.3 46.4 1.0
N F:THR392 4.4 45.3 1.0
N F:ALA389 4.4 47.0 1.0
CA F:GLY387 4.6 45.3 1.0
CA F:THR392 4.6 44.1 1.0
CA F:ALA389 4.7 43.8 1.0
O F:GLY387 4.7 40.9 1.0
CB F:ALA388 4.7 46.9 1.0
CG1 F:VAL391 4.8 49.2 1.0
CA F:ALA385 4.9 35.4 1.0
C F:ALA389 4.9 40.6 1.0

Reference:

T.Lagautriere, G.Bashiri, E.N.Baker. Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis To Be Published.
Page generated: Sat Aug 17 04:53:49 2024

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