Atomistry » Magnesium » PDB 4la7-4lj9 » 4lem
Atomistry »
  Magnesium »
    PDB 4la7-4lj9 »
      4lem »

Magnesium in PDB 4lem: Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis

Enzymatic activity of Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis

All present enzymatic activity of Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis:
1.5.1.12;

Protein crystallography data

The structure of Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis, PDB code: 4lem was solved by T.Lagautriere, G.Bashiri, E.N.Baker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.01 / 2.27
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 164.299, 164.299, 259.114, 90.00, 90.00, 120.00
R / Rfree (%) 14.8 / 20.4

Other elements in 4lem:

The structure of Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis also contains other interesting chemical elements:

Cobalt (Co) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis (pdb code 4lem). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis, PDB code: 4lem:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 4lem

Go back to Magnesium Binding Sites List in 4lem
Magnesium binding site 1 out of 3 in the Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg602

b:43.9
occ:1.00
 O C:VAL391 2.3 40.3 1.0
O C:ALA388 2.4 32.6 1.0
O C:ALA385 2.6 25.9 1.0
O C:LYS386 2.7 22.4 1.0
C C:LYS386 3.2 24.9 1.0
C C:ALA388 3.5 31.7 1.0
O C:HOH807 3.5 32.5 1.0
C C:VAL391 3.5 37.8 1.0
CA C:LYS386 3.7 27.1 1.0
C C:ALA385 3.7 24.3 1.0
N C:ALA388 3.8 30.5 1.0
C C:GLY387 4.1 31.9 1.0
N C:GLY387 4.1 26.3 1.0
CA C:ALA388 4.2 32.7 1.0
N C:LYS386 4.2 25.4 1.0
CA C:VAL391 4.4 37.2 1.0
N C:THR392 4.4 37.8 1.0
N C:VAL391 4.4 47.0 1.0
N C:ALA389 4.5 36.2 1.0
CB C:VAL391 4.5 38.5 1.0
CA C:THR392 4.5 40.5 1.0
CA C:GLY387 4.5 28.2 1.0
O C:GLY387 4.7 32.9 1.0
CA C:ALA389 4.8 40.7 1.0
CB C:ALA388 4.8 32.1 1.0
O C:HOH1019 4.9 42.0 1.0
C C:ALA389 5.0 34.4 1.0
CA C:ALA385 5.0 24.4 1.0

Magnesium binding site 2 out of 3 in 4lem

Go back to Magnesium Binding Sites List in 4lem
Magnesium binding site 2 out of 3 in the Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg602

b:49.2
occ:1.00
 O D:VAL391 2.2 39.1 1.0
O D:ALA388 2.5 47.6 1.0
O D:ALA385 2.6 31.2 1.0
O D:LYS386 2.7 41.7 1.0
O D:HOH828 2.8 38.0 1.0
C D:LYS386 3.4 42.5 1.0
C D:VAL391 3.5 36.6 1.0
C D:ALA388 3.5 44.4 1.0
CA D:LYS386 3.7 42.4 1.0
C D:ALA385 3.7 34.6 1.0
N D:ALA388 4.1 43.2 1.0
N D:LYS386 4.2 34.2 1.0
CA D:VAL391 4.4 38.3 1.0
N D:ALA389 4.4 49.3 1.0
N D:THR392 4.4 35.8 1.0
CA D:THR392 4.4 36.2 1.0
CA D:ALA388 4.4 37.9 1.0
N D:VAL391 4.4 39.5 1.0
N D:GLY387 4.5 41.8 1.0
CB D:VAL391 4.5 39.0 1.0
CA D:ALA389 4.5 48.7 1.0
C D:GLY387 4.7 46.3 1.0
N D:VAL393 4.8 32.0 1.0
C D:ALA389 4.8 46.8 1.0
O D:ALA389 4.9 47.0 1.0

Magnesium binding site 3 out of 3 in 4lem

Go back to Magnesium Binding Sites List in 4lem
Magnesium binding site 3 out of 3 in the Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg601

b:52.2
occ:1.00
 O F:ALA388 2.2 42.4 1.0
O F:VAL391 2.3 50.5 1.0
O F:ALA385 2.5 36.1 1.0
O F:LYS386 2.8 41.9 1.0
O F:HOH795 2.8 42.6 1.0
C F:LYS386 3.3 41.4 1.0
C F:VAL391 3.4 45.4 1.0
C F:ALA388 3.4 46.5 1.0
C F:ALA385 3.6 36.4 1.0
CA F:LYS386 3.7 42.1 1.0
N F:ALA388 3.8 45.5 1.0
N F:GLY387 4.1 40.0 1.0
CA F:ALA388 4.1 47.0 1.0
C F:GLY387 4.1 44.8 1.0
CA F:VAL391 4.2 46.7 1.0
N F:LYS386 4.2 37.0 1.0
N F:VAL391 4.3 50.1 1.0
CB F:VAL391 4.3 46.4 1.0
N F:THR392 4.4 45.3 1.0
N F:ALA389 4.4 47.0 1.0
CA F:GLY387 4.6 45.3 1.0
CA F:THR392 4.6 44.1 1.0
CA F:ALA389 4.7 43.8 1.0
O F:GLY387 4.7 40.9 1.0
CB F:ALA388 4.7 46.9 1.0
CG1 F:VAL391 4.8 49.2 1.0
CA F:ALA385 4.9 35.4 1.0
C F:ALA389 4.9 40.6 1.0

Reference:

T.Lagautriere, G.Bashiri, E.N.Baker. Crystal Structure of the Delta-Pyrroline-5-Carboxylate Dehydrogenase From Mycobacterium Tuberculosis To Be Published.
Page generated: Mon Aug 11 18:31:42 2025

Last articles

Mg in 5DH9
Mg in 5DH4
Mg in 5DGH
Mg in 5DGT
Mg in 5DGK
Mg in 5DEI
Mg in 5DGI
Mg in 5DGD
Mg in 5DGB
Mg in 5DGA
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy