Magnesium in PDB 4lja: Clpb NBD2 R621Q From T. Thermophilus in Complex with Amppcp and Guanidinium Chloride

The structure of Clpb NBD2 R621Q From T. Thermophilus in Complex with Amppcp and Guanidinium Chloride, PDB code: 4lja was solved by C.Zeymer, T.R.M.Barends, N.D.Werbeck, I.Schlichting, J.Reinstein, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.92 / 2.00
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	74.800, 74.800, 119.500, 90.00, 90.00, 120.00
R / Rfree (%)	21.7 / 26.3

The binding sites of Magnesium atom in the Clpb NBD2 R621Q From T. Thermophilus in Complex with Amppcp and Guanidinium Chloride (pdb code 4lja). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Clpb NBD2 R621Q From T. Thermophilus in Complex with Amppcp and Guanidinium Chloride, PDB code: 4lja:

Magnesium binding site 1 out of 1 in the Clpb NBD2 R621Q From T. Thermophilus in Complex with Amppcp and Guanidinium Chloride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Clpb NBD2 R621Q From T. Thermophilus in Complex with Amppcp and Guanidinium Chloride within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:35.0 occ:1.00 OG1 A:THR602 1.9 28.9 1.0 O1G A:ACP901 2.0 38.4 1.0 O1B A:ACP901 2.0 35.0 1.0 O A:HOH1002 2.1 32.6 1.0 O A:HOH1001 2.2 28.4 1.0 O A:HOH1003 2.2 23.9 1.0 CB A:THR602 3.1 27.9 1.0 PB A:ACP901 3.2 35.0 1.0 PG A:ACP901 3.3 38.6 1.0 C3B A:ACP901 3.5 37.1 1.0 O A:HOH1004 3.8 24.4 1.0 CG2 A:THR602 4.0 28.1 1.0 O3G A:ACP901 4.1 38.6 1.0 O2B A:ACP901 4.1 34.0 1.0 CA A:THR602 4.1 27.0 1.0 O1A A:ACP901 4.2 34.6 1.0 OD1 A:ASP667 4.2 33.5 1.0 N A:THR602 4.2 26.0 1.0 N3 A:GAI903 4.3 42.7 1.0 OD2 A:ASP667 4.3 34.7 1.0 O2G A:ACP901 4.4 38.7 1.0 O3A A:ACP901 4.4 36.1 1.0 CG A:ASP667 4.6 31.7 1.0 PA A:ACP901 4.7 35.4 1.0 CD2 A:LEU665 4.8 32.7 1.0 C A:GAI903 4.9 44.1 1.0

C.Zeymer, T.R.M.Barends, N.D.Werbeck, I.Schlichting, J.Reinstein. Elements in Nucleotide Sensing and Hydrolysis of the Aaa+ Disaggregation Machine Clpb: A Structure-Based Mechanistic Dissection of A Molecular Motor Acta Crystallogr.,Sect.D V. 70 582 2014.
ISSN: ISSN 0907-4449
PubMed: 24531492
DOI: 10.1107/S1399004713030629