Magnesium in PDB 4ljy: Crystal Structure of Rna Splicing Effector PRP5 in Complex with Adp

All present enzymatic activity of Crystal Structure of Rna Splicing Effector PRP5 in Complex with Adp:
3.6.4.13;

The structure of Crystal Structure of Rna Splicing Effector PRP5 in Complex with Adp, PDB code: 4ljy was solved by Z.-M.Zhang, J.Li, F.Yang, Y.Xu, J.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.30 / 1.95
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	86.598, 86.598, 125.316, 90.00, 90.00, 90.00
R / Rfree (%)	20.1 / 22.6

The binding sites of Magnesium atom in the Crystal Structure of Rna Splicing Effector PRP5 in Complex with Adp (pdb code 4ljy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Rna Splicing Effector PRP5 in Complex with Adp, PDB code: 4ljy:

Magnesium binding site 1 out of 1 in the Crystal Structure of Rna Splicing Effector PRP5 in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Rna Splicing Effector PRP5 in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg702 b:34.5 occ:1.00 O A:HOH966 2.2 25.6 1.0 O A:HOH968 2.2 36.7 1.0 O3B A:ADP701 2.3 26.4 1.0 O A:HOH969 2.3 26.8 1.0 O A:HOH967 2.3 30.4 1.0 O A:HOH965 2.3 30.4 1.0 PB A:ADP701 3.4 27.1 1.0 O1B A:ADP701 3.7 27.9 1.0 OD2 A:ASP415 3.8 25.4 1.0 OE2 A:GLU416 3.9 29.9 1.0 OG1 A:THR307 3.9 24.4 1.0 OD1 A:ASP415 4.0 25.8 1.0 O1A A:ADP701 4.2 27.9 1.0 CG A:ASP415 4.3 28.1 1.0 O3A A:ADP701 4.4 26.4 1.0 O2B A:ADP701 4.5 25.8 1.0 CD A:GLU416 4.5 31.6 1.0 CG A:GLU416 4.5 30.9 1.0 PA A:ADP701 4.6 25.4 1.0 CE A:LYS306 4.7 25.7 1.0 O2A A:ADP701 4.7 25.5 1.0 CB A:LYS306 4.8 23.5 1.0 N A:THR307 4.9 24.8 1.0 O A:HOH817 4.9 28.6 1.0 O A:HOH964 5.0 38.7 1.0

Z.-M.Zhang, F.Yang, J.Zhang, Q.Tang, J.Li, J.Gu, J.Zhou, Y.-Z.Xu. Crystal Structure of PRP5P Reveals Interdomain Interactions That Impact Spliceosome Assembly Cell Rep 2013.
ISSN: ESSN 2211-1247
DOI: 10.1016/J.CELREP.2013.10.047