Atomistry » Magnesium » PDB 4lja-4lsh » 4lqv
Atomistry »
  Magnesium »
    PDB 4lja-4lsh »
      4lqv »

Magnesium in PDB 4lqv: Thrirty Minutes Iron Loaded Frog M Ferritin

Enzymatic activity of Thrirty Minutes Iron Loaded Frog M Ferritin

All present enzymatic activity of Thrirty Minutes Iron Loaded Frog M Ferritin:
1.16.3.1;

Protein crystallography data

The structure of Thrirty Minutes Iron Loaded Frog M Ferritin, PDB code: 4lqv was solved by S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.23 / 1.54
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 184.084, 184.084, 184.084, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 19.3

Other elements in 4lqv:

The structure of Thrirty Minutes Iron Loaded Frog M Ferritin also contains other interesting chemical elements:

Iron (Fe) 3 atoms
Chlorine (Cl) 5 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Thrirty Minutes Iron Loaded Frog M Ferritin (pdb code 4lqv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Thrirty Minutes Iron Loaded Frog M Ferritin, PDB code: 4lqv:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in 4lqv

Go back to Magnesium Binding Sites List in 4lqv
Magnesium binding site 1 out of 6 in the Thrirty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Thrirty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg204

b:15.6
occ:0.80
 O A:HOH656 2.0 17.3 0.8
O A:HOH452 2.1 14.2 0.8
O A:HOH640 2.1 18.7 0.8
O A:HOH483 2.1 10.9 0.8
OG A:SER10 2.1 10.8 1.0
O A:HOH667 2.1 17.9 0.8
CB A:SER10 3.2 9.7 1.0
CA A:SER10 3.9 9.2 1.0
O A:SER10 4.1 8.9 1.0
OE1 A:GLU13 4.2 8.2 1.0
O A:HOH487 4.3 34.2 1.0
O A:HOH344 4.3 15.4 1.0
C A:SER10 4.3 9.1 1.0
O A:HOH358 4.4 12.4 1.0
O A:HOH571 4.4 33.8 1.0
O A:HOH553 4.5 34.5 1.0
CD A:GLU13 4.7 7.8 1.0

Magnesium binding site 2 out of 6 in 4lqv

Go back to Magnesium Binding Sites List in 4lqv
Magnesium binding site 2 out of 6 in the Thrirty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Thrirty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg205

b:5.7
occ:0.33
 O A:HOH505 1.8 26.9 1.0
O A:HOH562 1.9 25.4 1.0
OD1 A:ASP127 3.8 11.4 1.0
OG A:SER131 4.0 11.1 0.6
OE1 A:GLU130 4.1 10.5 1.0
O A:HOH647 4.2 31.9 1.0
CB A:GLU130 4.7 9.9 1.0
CG A:ASP127 4.9 10.9 1.0
O A:HOH493 4.9 13.4 0.7
CD A:GLU130 4.9 10.1 1.0

Magnesium binding site 3 out of 6 in 4lqv

Go back to Magnesium Binding Sites List in 4lqv
Magnesium binding site 3 out of 6 in the Thrirty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Thrirty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg206

b:11.2
occ:0.70
 O A:HOH431 2.0 15.4 0.7
O A:HOH493 2.1 13.4 0.7
O A:HOH509 2.1 17.5 0.7
O A:HOH666 2.1 12.0 0.7
O A:HOH655 2.1 14.8 0.7
O A:HOH641 2.1 17.0 0.7
OD2 A:ASP127 4.1 11.6 1.0
O A:HOH529 4.2 32.0 1.0
O A:HOH477 4.3 26.6 1.0
OD1 A:ASP127 4.4 11.4 1.0
CG A:ASP127 4.7 10.9 1.0
OG A:SER131 4.8 11.1 0.6
O A:HOH541 4.9 30.0 1.0
O A:HOH647 4.9 31.9 1.0
OG A:SER131 5.0 11.7 0.4

Magnesium binding site 4 out of 6 in 4lqv

Go back to Magnesium Binding Sites List in 4lqv
Magnesium binding site 4 out of 6 in the Thrirty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Thrirty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg207

b:6.1
occ:0.33
 O A:HOH355 2.0 10.2 1.0
O A:HOH320 2.1 8.2 1.0
OE2 A:GLU130 3.8 10.0 1.0
O A:HOH361 4.2 11.0 1.0
OE1 A:GLU130 4.3 10.5 1.0
O A:HOH342 4.3 13.6 1.0
CD A:GLU130 4.5 10.1 1.0

Magnesium binding site 5 out of 6 in 4lqv

Go back to Magnesium Binding Sites List in 4lqv
Magnesium binding site 5 out of 6 in the Thrirty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Thrirty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg208

b:6.1
occ:0.50
 O A:HOH343 1.9 13.5 1.0
O A:HOH430 1.9 10.8 1.0
O A:HOH398 2.0 6.9 0.5
O A:HOH410 2.2 9.6 0.5
O A:HOH339 4.0 12.2 1.0
CD A:LYS82 4.1 8.2 0.5
NZ A:LYS82 4.3 8.3 0.5
CE A:LYS82 4.4 8.3 0.5
CD A:LYS82 4.7 8.0 0.5
CE A:LYS83 4.7 8.3 0.5
CE A:LYS82 4.8 8.2 0.5
O A:HOH390 4.8 18.4 1.0
CE A:LYS83 4.9 8.5 0.5

Magnesium binding site 6 out of 6 in 4lqv

Go back to Magnesium Binding Sites List in 4lqv
Magnesium binding site 6 out of 6 in the Thrirty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Thrirty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg209

b:13.8
occ:0.60
 O A:HOH611 1.9 16.5 0.4
O A:HOH597 2.0 15.4 0.6
O A:HOH603 2.1 26.0 0.6
O A:HOH622 2.2 27.2 0.6
O A:HOH596 2.2 7.5 0.6
O A:HOH673 2.3 28.7 0.6
O A:HOH445 4.0 21.9 1.0
OD1 A:ASN21 4.3 6.8 1.0
O A:HOH405 4.4 20.5 1.0
O A:HOH482 4.5 14.4 1.0
O A:ARG18 4.5 8.1 1.0
O A:HOH423 4.6 22.1 1.0
O A:HOH407 4.8 16.8 1.0
CB A:LEU22 4.9 7.8 1.0
O A:HOH427 5.0 20.9 1.0

Reference:

S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli. Crystallographic Snapshots of Iron in Frog M Ferritin To Be Published.
Page generated: Mon Aug 19 20:01:12 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy