Magnesium in PDB 4ly6: Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis

The structure of Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis, PDB code: 4ly6 was solved by T.A.Sysoeva, S.Chowdhury, L.Guo, B.T.Nixon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.85 / 3.60
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	119.339, 130.037, 206.368, 90.00, 89.73, 89.90
R / Rfree (%)	25.8 / 30.8

The structure of Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis also contains other interesting chemical elements:

Fluorine

(F)

60 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Magnesium atom in the Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis (pdb code 4ly6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 20 binding sites of Magnesium where determined in the Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis, PDB code: 4ly6:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 20 in the Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:0.1 occ:0.58 F2 A:08T400 1.7 1.0 0.8 OD2 A:ASP238 2.2 0.8 1.0 OD1 A:ASP238 2.4 1.0 1.0 O2B A:08T400 2.5 0.4 0.8 CG A:ASP238 2.6 0.5 1.0 O3B A:08T400 2.6 1.0 0.8 BE A:08T400 2.6 0.4 0.8 HG2 A:GLU239 3.1 0.7 1.0 OE2 A:GLU239 3.1 0.9 1.0 F3 A:08T400 3.2 0.2 0.8 PB A:08T400 3.2 0.7 0.8 CD A:GLU239 3.5 0.5 1.0 HH22 B:ARG299 3.6 0.6 1.0 CG A:GLU239 3.8 0.6 1.0 F1 A:08T400 3.8 0.6 0.8 CB A:ASP238 4.1 0.2 1.0 OG A:SER169 4.1 1.0 1.0 HG3 A:GLU239 4.1 0.7 1.0 H A:GLU239 4.2 0.2 1.0 O3A A:08T400 4.3 0.9 0.8 O1B A:08T400 4.3 0.1 0.8 OE1 A:GLU239 4.3 0.7 1.0 NH2 B:ARG299 4.3 0.0 1.0 HB3 A:ASP238 4.4 0.9 1.0 HE2 A:LYS173 4.5 0.6 1.0 HB2 A:ASP238 4.6 0.9 1.0 HH12 B:ARG299 4.6 0.6 1.0 N A:GLU239 4.6 1.0 1.0 HH21 B:ARG299 4.7 0.6 1.0 HD13 B:LEU252 4.7 0.7 1.0 HH22 A:ARG357 4.8 0.9 1.0 HA A:ASP238 4.8 0.8 1.0 HB3 A:ASN280 4.9 0.8 1.0 CA A:ASP238 4.9 0.5 1.0 HZ1 A:LYS173 5.0 0.5 1.0

Magnesium binding site 2 out of 20 in the Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:0.2 occ:1.00 O2B B:08T400 2.0 0.2 0.9 OD2 B:ASP238 2.1 0.6 1.0 OD1 B:ASP238 2.2 0.5 1.0 CG B:ASP238 2.4 0.9 1.0 HG2 B:GLU239 3.3 0.5 1.0 PB B:08T400 3.4 0.7 0.9 OE2 B:GLU239 3.7 0.3 1.0 HH22 C:ARG299 3.7 0.6 1.0 O3B B:08T400 3.8 0.8 0.9 HB2 B:GLU174 3.9 0.1 1.0 CB B:ASP238 3.9 1.0 1.0 CG B:GLU239 4.0 0.0 1.0 HE2 B:LYS173 4.0 0.6 1.0 CD B:GLU239 4.0 0.5 1.0 HH21 C:ARG299 4.1 0.6 1.0 HZ B:PHE236 4.2 0.1 1.0 NH2 C:ARG299 4.2 1.0 1.0 F2 B:08T400 4.2 0.8 0.9 HG3 B:GLU239 4.3 0.5 1.0 HB2 B:ASP238 4.3 0.4 1.0 HB3 B:ASP238 4.3 0.4 1.0 H B:GLU239 4.4 0.9 1.0 O1B B:08T400 4.4 0.3 0.9 OE2 B:GLU174 4.4 0.6 1.0 O3A B:08T400 4.4 0.9 0.9 HB2 B:LYS173 4.4 0.7 1.0 BE B:08T400 4.5 0.2 0.9 HE2 B:PHE236 4.6 0.4 1.0 HA B:ASP238 4.6 1.0 1.0 HD23 C:LEU252 4.6 0.8 1.0 HB3 B:ALA278 4.7 0.2 1.0 HD21 C:LEU252 4.7 0.8 1.0 N B:GLU239 4.7 0.3 1.0 CA B:ASP238 4.8 0.1 1.0 F3 B:08T400 4.8 0.0 0.9 CB B:GLU174 4.8 0.9 1.0 H B:GLU174 4.9 0.5 1.0 CE B:LYS173 4.9 0.3 1.0 CZ B:PHE236 4.9 91.7 1.0 OE1 B:GLU239 4.9 0.3 1.0 HD2 C:ARG253 5.0 0.0 1.0 HG3 C:ARG253 5.0 0.1 1.0

Magnesium binding site 3 out of 20 in the Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:82.1 occ:1.00 F2 C:08T400 1.8 0.4 0.8 O3B C:08T400 2.4 0.6 0.8 O2B C:08T400 2.4 0.3 0.8 BE C:08T400 2.5 0.0 0.8 PB C:08T400 3.0 0.1 0.8 HH22 D:ARG299 3.1 0.9 1.0 F3 C:08T400 3.1 0.9 0.8 OD2 C:ASP238 3.4 0.9 1.0 OD1 C:ASP238 3.6 94.5 1.0 F1 C:08T400 3.7 0.3 0.8 OE2 C:GLU239 3.8 0.5 1.0 NH2 D:ARG299 3.8 0.2 1.0 HB2 C:LYS173 3.9 0.7 1.0 CG C:ASP238 3.9 0.9 1.0 HH21 D:ARG299 3.9 0.9 1.0 HD2 C:LYS173 4.0 0.3 1.0 O1B C:08T400 4.1 0.2 0.8 O3A C:08T400 4.1 0.6 0.8 OD1 C:ASN280 4.2 0.4 1.0 HH22 C:ARG357 4.3 0.3 1.0 HD21 C:ASN280 4.4 0.4 1.0 HG2 C:GLU239 4.4 0.4 1.0 CD C:GLU239 4.5 0.8 1.0 HH21 C:ARG357 4.6 0.3 1.0 HB2 C:GLU174 4.6 0.5 1.0 HB1 C:ALA278 4.8 0.9 1.0 NH2 C:ARG357 4.8 0.1 1.0 CB C:LYS173 4.8 0.1 1.0 HH12 D:ARG299 4.8 0.1 1.0 H C:GLY170 4.9 0.1 1.0 HZ2 C:LYS173 4.9 0.7 1.0 CD C:LYS173 4.9 0.6 1.0 H C:GLU174 5.0 0.3 1.0 CG C:GLU239 5.0 0.4 1.0

Magnesium binding site 4 out of 20 in the Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:0.0 occ:0.92 F2 D:08T400 1.7 0.9 0.9 OD2 D:ASP238 2.2 0.7 1.0 OD1 D:ASP238 2.3 0.9 1.0 CG D:ASP238 2.5 0.5 1.0 BE D:08T400 2.6 0.0 0.9 O3B D:08T400 2.6 93.1 0.9 O1B D:08T400 3.0 0.3 0.9 F1 D:08T400 3.4 0.9 0.9 PB D:08T400 3.4 0.2 0.9 HG2 D:GLU239 3.6 0.6 1.0 F3 D:08T400 3.7 94.9 0.9 OE1 D:GLU239 3.7 0.4 1.0 HE2 D:LYS173 3.8 0.2 1.0 HD21 D:ASN280 3.9 0.2 1.0 HH22 E:ARG299 4.0 1.0 1.0 CD D:GLU239 4.1 0.0 1.0 CB D:ASP238 4.1 0.2 1.0 HB2 D:GLU174 4.1 0.8 1.0 HZ D:PHE236 4.3 75.9 1.0 CG D:GLU239 4.3 0.6 1.0 HB1 D:ALA278 4.4 0.5 1.0 H D:GLU239 4.4 0.5 1.0 HB2 D:ASP238 4.4 0.4 1.0 HB2 D:LYS173 4.4 0.8 1.0 HB3 D:ALA278 4.4 0.5 1.0 HB3 D:ASP238 4.5 0.4 1.0 O3A D:08T400 4.5 94.1 0.9 OE1 D:GLU174 4.5 0.8 1.0 O2B D:08T400 4.5 96.9 0.9 NH2 E:ARG299 4.6 95.0 1.0 CE D:LYS173 4.6 0.2 1.0 HG3 D:GLU239 4.7 0.6 1.0 HH21 E:ARG299 4.7 1.0 1.0 HE3 D:LYS173 4.7 0.2 1.0 OE2 D:GLU239 4.7 0.9 1.0 HA D:ASP238 4.7 0.3 1.0 ND2 D:ASN280 4.8 0.7 1.0 HZ1 D:LYS173 4.8 0.8 1.0 N D:GLU239 4.9 0.2 1.0 CB D:ALA278 4.9 85.4 1.0 HH21 D:ARG357 4.9 0.7 1.0 CA D:ASP238 4.9 95.2 1.0 HH22 D:ARG357 5.0 0.7 1.0

Magnesium binding site 5 out of 20 in the Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg401 b:95.0 occ:1.00 OD2 E:ASP238 2.1 0.4 1.0 OD1 E:ASP238 2.1 0.9 1.0 O1B E:08T400 2.4 1.0 0.9 CG E:ASP238 2.4 0.9 1.0 F1 E:08T400 3.3 0.4 0.9 PB E:08T400 3.5 0.4 0.9 O3B E:08T400 3.5 95.9 0.9 HB2 E:GLU174 3.8 0.9 1.0 BE E:08T400 3.9 0.8 0.9 CB E:ASP238 3.9 0.6 1.0 HE2 E:LYS173 4.1 0.6 1.0 HZ E:PHE236 4.1 83.3 1.0 H E:GLU239 4.2 0.9 1.0 F2 E:08T400 4.2 0.7 0.9 O3A E:08T400 4.2 0.4 0.9 HB2 E:LYS173 4.3 80.6 1.0 HB3 E:ALA278 4.3 0.1 1.0 HB3 E:ASP238 4.3 1.0 1.0 HB2 E:ASP238 4.3 1.0 1.0 OE1 E:GLU174 4.4 0.9 1.0 HB2 E:GLU239 4.5 0.6 1.0 OE1 E:GLU239 4.5 0.8 1.0 HA E:ASP238 4.6 0.7 1.0 HB1 E:ALA278 4.6 0.1 1.0 HH22 F:ARG299 4.6 0.7 1.0 N E:GLU239 4.6 0.4 1.0 O2B E:08T400 4.7 0.8 0.9 HE2 E:PHE236 4.7 87.6 1.0 CA E:ASP238 4.7 0.2 1.0 CB E:GLU174 4.8 0.6 1.0 H E:GLU174 4.8 0.8 1.0 O2A E:08T400 4.8 96.9 0.9 CZ E:PHE236 4.9 69.5 1.0 CB E:ALA278 4.9 91.8 1.0 PA E:08T400 5.0 0.4 0.9 CE E:LYS173 5.0 0.0 1.0

Magnesium binding site 6 out of 20 in the Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg401 b:0.2 occ:0.21 F1 G:08T400 1.8 0.8 0.8 F2 G:08T400 2.0 0.8 0.8 OE1 G:GLU174 2.2 0.1 1.0 OD2 G:ASP238 2.3 0.7 1.0 BE G:08T400 2.4 0.5 0.8 O1A G:08T400 2.7 0.6 0.8 HB2 G:GLU174 2.8 0.6 1.0 O3B G:08T400 3.1 0.2 0.8 CD G:GLU174 3.3 0.9 1.0 CG G:ASP238 3.3 0.3 1.0 F3 G:08T400 3.5 0.3 0.8 CB G:GLU174 3.7 0.5 1.0 OD1 G:ASP238 3.8 0.1 1.0 HH22 H:ARG299 3.9 0.7 1.0 HE2 G:PHE236 4.0 0.7 1.0 HH21 H:ARG299 4.0 0.7 1.0 HB3 G:GLU174 4.0 0.6 1.0 CG G:GLU174 4.0 0.9 1.0 PA G:08T400 4.1 0.9 0.8 OE2 G:GLU174 4.3 0.4 1.0 NH2 H:ARG299 4.3 0.4 1.0 H2 G:08T400 4.3 0.9 0.8 HZ G:PHE236 4.3 0.5 1.0 PB G:08T400 4.4 0.9 0.8 HG3 G:GLU174 4.4 0.9 1.0 HB2 G:ASP238 4.4 0.3 1.0 CB G:ASP238 4.5 0.8 1.0 O3A G:08T400 4.6 0.0 0.8 H G:GLU174 4.6 0.1 1.0 CE2 G:PHE236 4.7 0.6 1.0 CA G:GLU174 4.7 0.1 1.0 HB3 G:ASP238 4.8 0.3 1.0 HA G:GLU174 4.8 0.2 1.0 O2A G:08T400 4.8 0.8 0.8 HG2 G:GLU174 4.8 0.9 1.0 CZ G:PHE236 4.9 0.1 1.0 N G:GLU174 5.0 0.8 1.0

Magnesium binding site 7 out of 20 in the Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg401 b:0.9 occ:0.79 F2 H:08T400 1.7 0.5 0.8 OD2 H:ASP238 2.1 0.3 1.0 OD1 H:ASP238 2.2 0.6 1.0 CG H:ASP238 2.5 0.1 1.0 O2B H:08T400 2.5 0.6 0.8 O3B H:08T400 2.5 0.8 0.8 BE H:08T400 2.6 0.2 0.8 OE2 H:GLU239 3.0 0.9 1.0 HG2 H:GLU239 3.1 0.2 1.0 PB H:08T400 3.1 0.7 0.8 F3 H:08T400 3.4 0.8 0.8 CD H:GLU239 3.6 0.3 1.0 F1 H:08T400 3.6 0.5 0.8 HH22 I:ARG299 3.7 0.5 1.0 CG H:GLU239 3.7 0.3 1.0 HB2 H:GLU174 3.8 0.5 1.0 HE2 H:LYS173 3.9 0.7 1.0 CB H:ASP238 4.0 0.2 1.0 HG3 H:GLU239 4.0 0.2 1.0 O3A H:08T400 4.2 0.1 0.8 O1B H:08T400 4.3 0.8 0.8 OE2 H:GLU174 4.3 0.1 1.0 HZ H:PHE236 4.3 0.7 1.0 HH21 I:ARG299 4.3 0.5 1.0 NH2 I:ARG299 4.3 0.2 1.0 H H:GLU239 4.3 0.6 1.0 HB3 H:ASP238 4.3 0.9 1.0 HB2 H:LYS173 4.3 0.3 1.0 HB2 H:ASP238 4.4 0.9 1.0 OE1 H:GLU239 4.5 1.0 1.0 HD21 I:LEU252 4.6 0.1 1.0 HB3 H:ALA278 4.6 1.0 1.0 HA H:ASP238 4.7 0.6 1.0 N H:GLU239 4.7 0.7 1.0 HE2 H:PHE236 4.7 0.3 1.0 HD23 I:LEU252 4.8 0.1 1.0 CB H:GLU174 4.8 0.4 1.0 H H:GLU174 4.8 1.0 1.0 HB1 H:ALA278 4.8 1.0 1.0 CE H:LYS173 4.8 0.9 1.0 CA H:ASP238 4.8 98.8 1.0

Magnesium binding site 8 out of 20 in the Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg401 b:0.5 occ:1.00 F3 I:08T400 1.8 0.5 0.8 OD1 I:ASP238 2.4 0.7 1.0 O2B I:08T400 2.8 0.6 0.8 OD2 I:ASP238 2.9 0.5 1.0 BE I:08T400 3.0 0.1 0.8 CG I:ASP238 3.0 0.4 1.0 O3B I:08T400 3.0 0.3 0.8 HE2 I:LYS173 3.2 0.9 1.0 PB I:08T400 3.5 0.8 0.8 HH22 J:ARG299 3.7 0.1 1.0 F2 I:08T400 3.8 0.4 0.8 F1 I:08T400 3.8 0.7 0.8 HH21 I:ARG357 3.9 0.6 1.0 CE I:LYS173 4.0 0.8 1.0 HE3 I:LYS173 4.0 0.9 1.0 HG2 I:GLU239 4.0 0.6 1.0 OE2 I:GLU239 4.1 0.8 1.0 HB2 I:LYS173 4.1 0.0 1.0 HZ1 I:LYS173 4.2 0.9 1.0 NH2 I:ARG357 4.3 0.8 1.0 O1B I:08T400 4.3 0.9 0.8 CD I:GLU239 4.4 0.3 1.0 H I:GLU239 4.4 0.8 1.0 NH2 J:ARG299 4.4 0.1 1.0 HB1 I:ALA278 4.5 0.8 1.0 HD22 I:ASN280 4.5 0.5 1.0 HB3 I:ASN280 4.5 0.1 1.0 HH21 J:ARG299 4.5 0.1 1.0 CB I:ASP238 4.6 0.5 1.0 NZ I:LYS173 4.6 0.1 1.0 HB3 I:ALA278 4.6 0.8 1.0 CG I:GLU239 4.7 0.5 1.0 HB2 I:GLU174 4.8 0.4 1.0 HZ3 I:LYS173 4.9 0.9 1.0 O3A I:08T400 4.9 0.2 0.8 HA I:ASP238 4.9 0.6 1.0 OE1 I:GLU239 4.9 0.9 1.0 HB2 I:ASP238 5.0 0.2 1.0 N I:GLU239 5.0 1.0 1.0 CB I:LYS173 5.0 0.5 1.0

Magnesium binding site 9 out of 20 in the Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg401 b:85.7 occ:1.00 F2 J:08T400 1.7 0.4 0.9 O3B J:08T400 2.4 0.1 0.9 BE J:08T400 2.5 0.4 0.9 PB J:08T400 3.0 0.0 0.9 O3A J:08T400 3.1 0.1 0.9 O1B J:08T400 3.2 0.2 0.9 F3 J:08T400 3.3 97.7 0.8 OE1 J:GLU239 3.3 0.3 1.0 HH22 K:ARG299 3.4 0.6 1.0 OD1 J:ASP238 3.6 0.1 1.0 F1 J:08T400 3.6 0.8 0.9 OD2 J:ASP238 3.6 0.0 1.0 HE2 J:LYS173 3.9 0.9 1.0 CG J:ASP238 4.0 0.2 1.0 CD J:GLU239 4.0 0.5 1.0 NH2 K:ARG299 4.2 0.6 1.0 HZ1 J:LYS173 4.3 0.5 1.0 HB2 J:LYS173 4.3 99.3 1.0 HG2 J:GLU239 4.4 0.4 1.0 OD1 J:ASN280 4.4 0.9 1.0 HH21 K:ARG299 4.4 0.6 1.0 HB2 J:GLU174 4.5 0.4 1.0 O2B J:08T400 4.5 0.0 0.9 PA J:08T400 4.5 0.1 0.9 HD21 J:ASN280 4.5 0.3 1.0 HH21 J:ARG357 4.5 0.9 1.0 O2A J:08T400 4.6 0.1 0.9 OE2 J:GLU239 4.6 0.3 1.0 HZ3 J:LYS173 4.7 0.5 1.0 CE J:LYS173 4.7 0.2 1.0 NZ J:LYS173 4.7 0.2 1.0 CG J:GLU239 4.8 0.7 1.0 HH12 K:ARG299 4.8 0.4 1.0 HG J:SER169 4.8 0.9 1.0 H J:GLU174 4.9 0.1 1.0 H J:GLY170 4.9 0.5 1.0 HB1 J:ALA278 5.0 0.3 1.0

Magnesium binding site 10 out of 20 in the Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives S54- Rnap Interaction and Atp Hydrolysis within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg401 b:0.7 occ:0.67 F2 K:08T400 1.8 0.3 0.9 OD2 K:ASP238 2.1 0.7 1.0 OD1 K:ASP238 2.2 0.5 1.0 CG K:ASP238 2.5 0.7 1.0 BE K:08T400 2.9 0.2 0.9 O3B K:08T400 3.0 96.2 0.9 OE1 K:GLU239 3.2 0.1 1.0 HG2 K:GLU239 3.2 0.8 1.0 O1B K:08T400 3.2 0.7 0.9 CD K:GLU239 3.6 0.3 1.0 F1 K:08T400 3.7 0.1 0.9 HE2 K:LYS173 3.7 0.4 1.0 PB K:08T400 3.8 0.6 0.9 CG K:GLU239 3.8 0.8 1.0 F3 K:08T400 3.9 0.7 0.9 HH22 L:ARG299 3.9 0.8 1.0 CB K:ASP238 4.0 0.7 1.0 H K:GLU239 4.2 0.7 1.0 HG3 K:GLU239 4.2 0.8 1.0 OD1 K:ASN280 4.3 0.3 1.0 HD21 K:ASN280 4.3 0.5 1.0 HB3 K:ASP238 4.4 0.8 1.0 OE2 K:GLU239 4.4 0.2 1.0 HB2 K:ASP238 4.4 0.8 1.0 CE K:LYS173 4.5 0.8 1.0 HE3 K:LYS173 4.5 0.4 1.0 HD23 L:LEU252 4.5 0.2 1.0 HB2 K:LYS173 4.5 0.4 1.0 N K:GLU239 4.6 0.1 1.0 HB3 K:ALA278 4.6 0.2 1.0 HA K:ASP238 4.7 0.7 1.0 NH2 L:ARG299 4.7 0.0 1.0 HZ1 K:LYS173 4.7 0.1 1.0 HB2 K:GLU174 4.7 0.1 1.0 HB1 K:ALA278 4.7 0.2 1.0 HD21 L:LEU252 4.8 0.2 1.0 CA K:ASP238 4.8 0.2 1.0 O2B K:08T400 4.8 0.1 0.9 HZ K:PHE236 4.9 96.9 1.0 HH21 L:ARG299 4.9 0.8 1.0 O3A K:08T400 4.9 0.0 0.9 C K:ASP238 5.0 0.1 1.0 ND2 K:ASN280 5.0 0.0 1.0

T.A.Sysoeva, S.Chowdhury, L.Guo, B.T.Nixon. Nucleotide-Induced Asymmetry Within Atpase Activator Ring Drives Sigma 54-Rnap Interaction and Atp Hydrolysis. Genes Dev. V. 27 2500 2013.
ISSN: ISSN 0890-9369
PubMed: 24240239
DOI: 10.1101/GAD.229385.113