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Magnesium in PDB 4lyu: Fifteen Minutes Iron Loaded Frog M Ferritin

Enzymatic activity of Fifteen Minutes Iron Loaded Frog M Ferritin

All present enzymatic activity of Fifteen Minutes Iron Loaded Frog M Ferritin:
1.16.3.1;

Protein crystallography data

The structure of Fifteen Minutes Iron Loaded Frog M Ferritin, PDB code: 4lyu was solved by S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.08 / 1.75
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 183.843, 183.843, 183.843, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 20.4

Other elements in 4lyu:

The structure of Fifteen Minutes Iron Loaded Frog M Ferritin also contains other interesting chemical elements:

Iron (Fe) 6 atoms
Chlorine (Cl) 9 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Fifteen Minutes Iron Loaded Frog M Ferritin (pdb code 4lyu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Fifteen Minutes Iron Loaded Frog M Ferritin, PDB code: 4lyu:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 4lyu

Go back to Magnesium Binding Sites List in 4lyu
Magnesium binding site 1 out of 7 in the Fifteen Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Fifteen Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg207

b:19.6
occ:0.80
 O A:HOH422 2.0 29.2 1.0
O A:HOH436 2.1 29.0 1.0
O A:HOH390 2.1 26.2 1.0
O A:HOH430 2.1 28.0 1.0
O A:HOH458 2.1 41.9 1.0
O A:HOH426 2.1 28.8 1.0
OD2 A:ASP127 4.2 17.1 1.0
OD1 A:ASP127 4.6 17.0 1.0
OG A:SER131 4.8 19.7 1.0
CG A:ASP127 4.8 16.1 1.0

Magnesium binding site 2 out of 7 in 4lyu

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Magnesium binding site 2 out of 7 in the Fifteen Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Fifteen Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg208

b:12.4
occ:0.50
 O A:HOH451 2.0 15.4 0.5
O A:HOH453 2.1 13.8 1.0
O A:HOH454 2.1 12.7 0.5
O A:HOH452 2.1 17.5 1.0
OD2 A:ASP80 4.0 9.9 1.0
OD1 A:ASP80 4.2 9.5 1.0
CG A:ASP80 4.5 9.5 1.0
O A:HOH414 4.7 10.4 1.0

Magnesium binding site 3 out of 7 in 4lyu

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Magnesium binding site 3 out of 7 in the Fifteen Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Fifteen Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg209

b:16.8
occ:0.33
 O A:HOH429 1.9 31.2 1.0
O A:HOH448 2.1 34.9 1.0
OD1 A:ASP127 3.7 17.0 1.0
OG A:SER131 4.1 19.7 1.0
OE1 A:GLU130 4.2 19.4 1.0
O A:HOH422 4.8 29.2 1.0
CG A:ASP127 4.9 16.1 1.0

Magnesium binding site 4 out of 7 in 4lyu

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Magnesium binding site 4 out of 7 in the Fifteen Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Fifteen Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg210

b:16.1
occ:0.33
 O A:HOH386 2.0 22.6 1.0
O A:HOH360 2.1 20.6 1.0
OE2 A:GLU130 3.8 19.0 1.0
O A:HOH409 4.2 21.0 1.0
OE1 A:GLU130 4.3 19.4 1.0
CD A:GLU130 4.5 18.1 1.0

Magnesium binding site 5 out of 7 in 4lyu

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Magnesium binding site 5 out of 7 in the Fifteen Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Fifteen Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg211

b:26.1
occ:1.00
 O A:HOH373 2.0 22.2 1.0
OG A:SER10 2.1 15.5 1.0
O A:HOH393 2.1 29.0 1.0
O A:HOH352 2.1 17.0 1.0
O A:HOH459 2.1 33.2 1.0
O A:HOH401 2.1 28.6 1.0
CB A:SER10 3.2 13.3 1.0
CA A:SER10 3.8 12.8 1.0
O A:SER10 4.0 12.0 1.0
OE1 A:GLU13 4.1 13.1 1.0
O A:HOH370 4.2 20.6 1.0
C A:SER10 4.3 12.4 1.0
O A:HOH411 4.4 33.4 1.0
O A:HOH345 4.5 17.9 1.0
CD A:GLU13 4.6 12.6 1.0

Magnesium binding site 6 out of 7 in 4lyu

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Magnesium binding site 6 out of 7 in the Fifteen Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Fifteen Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg212

b:23.9
occ:1.00
 O A:HOH460 2.0 33.9 1.0
O A:HOH343 2.0 24.1 1.0
O A:HOH461 2.1 40.7 1.0
O A:HOH463 2.1 35.6 1.0
O A:HOH348 2.2 16.8 1.0
O A:HOH462 2.3 37.5 1.0
OD1 A:ASN21 4.2 8.7 1.0
O A:HOH404 4.3 27.4 1.0
O A:ARG18 4.4 10.1 1.0
O A:HOH346 4.5 22.5 1.0
O A:HOH380 4.6 22.0 1.0
O A:HOH415 4.6 14.4 1.0
CB A:LEU22 4.8 9.5 1.0

Magnesium binding site 7 out of 7 in 4lyu

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Magnesium binding site 7 out of 7 in the Fifteen Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Fifteen Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg213

b:20.3
occ:0.25
 O A:HOH449 2.0 34.5 1.0
O A:HOH450 2.8 27.0 0.8
O A:HOH447 4.0 27.7 0.8
CG2 A:THR118 4.2 15.0 1.0
O A:HOH339 4.4 22.6 1.0
O A:HOH402 4.9 24.7 1.0

Reference:

S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli. Crystallographic Snapshots of Iron in Frog M Ferritin To Be Published.
Page generated: Mon Aug 19 20:08:58 2024

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