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Magnesium in PDB 4mb2: Crystal Structure of TON1374 in Complex with Atp

Enzymatic activity of Crystal Structure of TON1374 in Complex with Atp

All present enzymatic activity of Crystal Structure of TON1374 in Complex with Atp:
6.3.2.26;

Protein crystallography data

The structure of Crystal Structure of TON1374 in Complex with Atp, PDB code: 4mb2 was solved by M.-K.Kim, Y.J.An, S.-S.Cha, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.62 / 2.19
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 266.428, 60.909, 75.241, 90.00, 92.38, 90.00
R / Rfree (%) 20.1 / 26

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of TON1374 in Complex with Atp (pdb code 4mb2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of TON1374 in Complex with Atp, PDB code: 4mb2:

Magnesium binding site 1 out of 1 in 4mb2

Go back to Magnesium Binding Sites List in 4mb2
Magnesium binding site 1 out of 1 in the Crystal Structure of TON1374 in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of TON1374 in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:54.4
occ:1.00
O1B A:ATP301 2.2 0.2 1.0
O3G A:ATP301 2.5 81.0 1.0
O1A A:ATP301 2.8 70.5 1.0
PB A:ATP301 3.5 0.2 1.0
PG A:ATP301 3.8 0.3 1.0
PA A:ATP301 3.9 0.5 1.0
O3A A:ATP301 4.0 0.5 1.0
O3B A:ATP301 4.1 0.6 1.0
O2G A:ATP301 4.3 98.5 1.0
O3' A:ATP301 4.4 30.4 1.0
CB A:SER186 4.5 37.1 1.0
O5' A:ATP301 4.6 82.7 1.0
NH2 A:ARG39 4.6 59.8 1.0
C3' A:ATP301 4.6 32.2 1.0
NE A:ARG39 4.6 46.1 1.0
O2B A:ATP301 4.8 99.0 1.0
C4' A:ATP301 5.0 46.3 1.0

Reference:

M.-K.Kim, Y.J.An, S.-S.Cha. The Crystal Structure of A Novel Phosphopantothenate Synthetase From the Hyperthermophilic Archaea, Thermococcus Onnurineus NA1 Biochem.Biophys.Res.Commun. V. 439 533 2013.
ISSN: ISSN 0006-291X
PubMed: 24021277
DOI: 10.1016/J.BBRC.2013.09.008
Page generated: Mon Dec 14 19:12:11 2020

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