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Magnesium in PDB 4mfg: 2.0 Angstrom Resolution Crystal Structure of Putative Carbonic Anhydrase From Clostridium Difficile.

Protein crystallography data

The structure of 2.0 Angstrom Resolution Crystal Structure of Putative Carbonic Anhydrase From Clostridium Difficile., PDB code: 4mfg was solved by G.Minasov, Z.Wawrzak, M.Kudritska, S.Grimshaw, K.Kwon, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.36 / 2.00
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 127.089, 127.089, 76.732, 90.00, 90.00, 120.00
R / Rfree (%) 21.2 / 26.7

Other elements in 4mfg:

The structure of 2.0 Angstrom Resolution Crystal Structure of Putative Carbonic Anhydrase From Clostridium Difficile. also contains other interesting chemical elements:

Nickel (Ni) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the 2.0 Angstrom Resolution Crystal Structure of Putative Carbonic Anhydrase From Clostridium Difficile. (pdb code 4mfg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the 2.0 Angstrom Resolution Crystal Structure of Putative Carbonic Anhydrase From Clostridium Difficile., PDB code: 4mfg:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4mfg

Go back to Magnesium Binding Sites List in 4mfg
Magnesium binding site 1 out of 2 in the 2.0 Angstrom Resolution Crystal Structure of Putative Carbonic Anhydrase From Clostridium Difficile.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 2.0 Angstrom Resolution Crystal Structure of Putative Carbonic Anhydrase From Clostridium Difficile. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg201

b:25.1
occ:1.00
O C:HOH302 2.0 24.5 1.0
O A:HOH310 2.0 23.4 1.0
OD1 B:ASN39 2.1 25.3 1.0
OD1 C:ASN39 2.1 27.6 1.0
O B:HOH310 2.1 24.1 1.0
OD1 A:ASN39 2.1 24.9 1.0
CG C:ASN39 3.2 26.9 1.0
CG B:ASN39 3.2 23.5 1.0
CG A:ASN39 3.2 24.1 1.0
ND2 C:ASN39 3.6 27.4 1.0
ND2 B:ASN39 3.6 22.8 1.0
ND2 A:ASN39 3.7 25.8 1.0
O A:SER21 3.9 29.6 1.0
O B:SER21 3.9 23.0 1.0
O C:SER21 4.0 22.9 1.0
CB B:SER21 4.1 27.9 1.0
CB C:SER21 4.2 30.2 1.0
CB A:SER21 4.2 31.5 1.0
O C:HOH305 4.3 28.9 1.0
O A:HOH322 4.3 37.1 1.0
CB A:ASN39 4.4 23.9 1.0
O C:HOH313 4.4 26.5 1.0
CB C:ASN39 4.4 26.8 1.0
CB B:ASN39 4.4 23.8 1.0
CA B:SER21 4.7 26.4 1.0
CA A:SER21 4.7 31.3 1.0
C A:SER21 4.7 29.9 1.0
C B:SER21 4.8 24.0 1.0
CA C:SER21 4.8 27.9 1.0
C C:SER21 4.8 25.1 1.0
CA A:ASN39 4.9 22.8 1.0
CA B:ASN39 4.9 22.7 1.0
CA C:ASN39 4.9 23.1 1.0

Magnesium binding site 2 out of 2 in 4mfg

Go back to Magnesium Binding Sites List in 4mfg
Magnesium binding site 2 out of 2 in the 2.0 Angstrom Resolution Crystal Structure of Putative Carbonic Anhydrase From Clostridium Difficile.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 2.0 Angstrom Resolution Crystal Structure of Putative Carbonic Anhydrase From Clostridium Difficile. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg201

b:25.6
occ:0.33
O D:HOH304 2.0 26.0 1.0
OD1 D:ASN39 2.1 28.2 1.0
CG D:ASN39 3.2 27.1 1.0
ND2 D:ASN39 3.7 28.1 1.0
O D:SER21 4.0 25.4 1.0
CB D:SER21 4.2 32.7 1.0
CB D:ASN39 4.4 25.8 1.0
O D:HOH313 4.5 25.9 1.0
CA D:SER21 4.7 31.2 1.0
C D:SER21 4.8 27.5 1.0
CA D:ASN39 4.9 23.6 1.0

Reference:

G.Minasov, Z.Wawrzak, M.Kudritska, S.Grimshaw, K.Kwon, A.Savchenko, W.F.Anderson. 2.0 Angstrom Resolution Crystal Structure of Putative Carbonic Anhydrase From Clostridium Difficile. To Be Published.
Page generated: Mon Dec 14 19:12:32 2020

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