Atomistry » Magnesium » PDB 4mfe-4mpj » 4mgh
Atomistry »
  Magnesium »
    PDB 4mfe-4mpj »
      4mgh »

Magnesium in PDB 4mgh: Importance of Hydrophobic Cavities in Allosteric Regulation of Formylglycinamide Synthetase: Insight From Xenon Trapping and Statistical Coupling Analysis

Enzymatic activity of Importance of Hydrophobic Cavities in Allosteric Regulation of Formylglycinamide Synthetase: Insight From Xenon Trapping and Statistical Coupling Analysis

All present enzymatic activity of Importance of Hydrophobic Cavities in Allosteric Regulation of Formylglycinamide Synthetase: Insight From Xenon Trapping and Statistical Coupling Analysis:
6.3.5.3;

Protein crystallography data

The structure of Importance of Hydrophobic Cavities in Allosteric Regulation of Formylglycinamide Synthetase: Insight From Xenon Trapping and Statistical Coupling Analysis, PDB code: 4mgh was solved by A.S.Tanwar, V.D.Goyal, D.Choudhary, S.Panjikar, R.Anand, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.99 / 2.65
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 146.448, 146.448, 141.687, 90.00, 90.00, 120.00
R / Rfree (%) 15.3 / 20.3

Other elements in 4mgh:

The structure of Importance of Hydrophobic Cavities in Allosteric Regulation of Formylglycinamide Synthetase: Insight From Xenon Trapping and Statistical Coupling Analysis also contains other interesting chemical elements:

Manganese (Mn) 1 atom
Xenon (Xe) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Importance of Hydrophobic Cavities in Allosteric Regulation of Formylglycinamide Synthetase: Insight From Xenon Trapping and Statistical Coupling Analysis (pdb code 4mgh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Importance of Hydrophobic Cavities in Allosteric Regulation of Formylglycinamide Synthetase: Insight From Xenon Trapping and Statistical Coupling Analysis, PDB code: 4mgh:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 4mgh

Go back to Magnesium Binding Sites List in 4mgh
Magnesium binding site 1 out of 4 in the Importance of Hydrophobic Cavities in Allosteric Regulation of Formylglycinamide Synthetase: Insight From Xenon Trapping and Statistical Coupling Analysis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Importance of Hydrophobic Cavities in Allosteric Regulation of Formylglycinamide Synthetase: Insight From Xenon Trapping and Statistical Coupling Analysis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1302

b:15.7
occ:1.00
 OD1 A:ASP884 2.1 15.6 1.0
OD1 A:ASN722 2.1 12.7 1.0
O A:HOH1904 2.1 10.1 1.0
O2B A:ADP1301 2.2 8.0 1.0
OD1 A:ASP679 2.3 13.0 1.0
CG A:ASP884 2.9 15.1 1.0
CG A:ASN722 3.1 13.0 1.0
OD2 A:ASP884 3.1 16.0 1.0
PB A:ADP1301 3.2 8.3 1.0
CG A:ASP679 3.3 13.3 1.0
ND2 A:ASN722 3.4 12.1 1.0
O1B A:ADP1301 3.7 8.2 1.0
O3B A:ADP1301 3.8 8.1 1.0
OG A:SER886 3.8 17.5 1.0
CB A:ASP679 4.1 12.7 1.0
OD2 A:ASP679 4.2 12.9 1.0
O A:HOH1906 4.2 20.4 1.0
CB A:ASP884 4.3 14.2 1.0
OE2 A:GLU718 4.4 16.3 1.0
O A:ASP884 4.4 14.2 1.0
CB A:ASN722 4.4 14.0 1.0
O3A A:ADP1301 4.5 8.1 1.0
CA A:ASP679 4.6 12.6 1.0
CB A:SER886 4.6 15.5 1.0
NE2 A:HIS883 4.7 11.0 1.0
CA A:ASN722 4.7 14.4 1.0
C A:ASP884 4.7 14.3 1.0
CD2 A:HIS883 4.7 11.7 1.0
N A:ASP884 4.8 14.0 1.0
CA A:ASP884 4.8 14.2 1.0

Magnesium binding site 2 out of 4 in 4mgh

Go back to Magnesium Binding Sites List in 4mgh
Magnesium binding site 2 out of 4 in the Importance of Hydrophobic Cavities in Allosteric Regulation of Formylglycinamide Synthetase: Insight From Xenon Trapping and Statistical Coupling Analysis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Importance of Hydrophobic Cavities in Allosteric Regulation of Formylglycinamide Synthetase: Insight From Xenon Trapping and Statistical Coupling Analysis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1303

b:15.2
occ:1.00
 O A:HOH1833 1.9 8.9 1.0
OE2 A:GLU718 2.0 16.3 1.0
O A:HOH1479 2.1 9.7 1.0
O A:HOH1460 2.2 13.0 1.0
O1B A:ADP1301 2.3 8.2 1.0
CD A:GLU718 2.9 15.2 1.0
OE1 A:GLU718 3.2 15.9 1.0
PB A:ADP1301 3.7 8.3 1.0
O A:HOH1787 3.9 28.8 1.0
OE1 A:GLU699 4.0 23.4 1.0
O3B A:ADP1301 4.0 8.1 1.0
OD2 A:ASP887 4.2 15.6 1.0
CG A:GLU718 4.3 14.9 1.0
O A:ILE697 4.3 11.1 1.0
O A:GLU699 4.3 21.0 1.0
ND2 A:ASN722 4.4 12.1 1.0
O1A A:ADP1301 4.5 8.3 1.0
O3A A:ADP1301 4.6 8.1 1.0
CB A:SER886 4.7 15.5 1.0
OG A:SER886 4.7 17.5 1.0
N A:GLU699 4.8 16.3 1.0
O2B A:ADP1301 4.9 8.0 1.0
CA A:GLY698 4.9 14.6 1.0
CB A:TYR388 4.9 13.1 1.0
CB A:GLU699 5.0 19.2 1.0

Magnesium binding site 3 out of 4 in 4mgh

Go back to Magnesium Binding Sites List in 4mgh
Magnesium binding site 3 out of 4 in the Importance of Hydrophobic Cavities in Allosteric Regulation of Formylglycinamide Synthetase: Insight From Xenon Trapping and Statistical Coupling Analysis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Importance of Hydrophobic Cavities in Allosteric Regulation of Formylglycinamide Synthetase: Insight From Xenon Trapping and Statistical Coupling Analysis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1304

b:16.3
occ:1.00
 O A:HOH1899 2.0 12.9 1.0
O3B A:ADP1301 2.0 8.1 1.0
O2A A:ADP1301 2.1 7.8 1.0
O A:HOH1698 2.3 7.9 1.0
O A:HOH1448 2.4 6.3 1.0
PB A:ADP1301 3.2 8.3 1.0
PA A:ADP1301 3.3 8.5 1.0
O3A A:ADP1301 3.6 8.1 1.0
OE1 A:GLU896 3.7 13.2 1.0
O A:HOH1414 3.8 20.5 1.0
O2B A:ADP1301 3.9 8.0 1.0
O A:HOH1904 3.9 10.1 1.0
OG A:SER886 4.0 17.5 1.0
OE2 A:GLU896 4.0 13.9 1.0
O A:HOH1906 4.1 20.4 1.0
O A:HOH1479 4.2 9.7 1.0
O1A A:ADP1301 4.3 8.3 1.0
CD A:GLU896 4.3 13.1 1.0
O A:HOH1717 4.3 14.7 1.0
O1B A:ADP1301 4.5 8.2 1.0
O5' A:ADP1301 4.5 9.1 1.0
O A:VAL646 4.6 14.4 1.0
C5' A:ADP1301 4.7 9.2 1.0
O A:THR645 4.9 11.8 1.0
O A:ASP887 4.9 13.2 1.0

Magnesium binding site 4 out of 4 in 4mgh

Go back to Magnesium Binding Sites List in 4mgh
Magnesium binding site 4 out of 4 in the Importance of Hydrophobic Cavities in Allosteric Regulation of Formylglycinamide Synthetase: Insight From Xenon Trapping and Statistical Coupling Analysis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Importance of Hydrophobic Cavities in Allosteric Regulation of Formylglycinamide Synthetase: Insight From Xenon Trapping and Statistical Coupling Analysis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1305

b:2.8
occ:1.00
 OH A:TYR251 3.6 13.8 1.0
CZ A:TYR251 3.8 13.7 1.0
CE1 A:TYR251 4.0 13.5 1.0
OD2 A:ASP250 4.3 21.9 1.0
CE2 A:TYR251 4.5 14.2 1.0
CB A:ASP250 4.8 18.5 1.0
CD1 A:TYR251 4.8 13.3 1.0
OD2 A:ASP730 5.0 14.1 1.0

Reference:

A.S.Tanwar, V.D.Goyal, D.Choudhary, S.Panjikar, R.Anand. Importance of Hydrophobic Cavities in Allosteric Regulation of Formylglycinamide Synthetase: Insight From Xenon Trapping and Statistical Coupling Analysis Plos One V. 8 77781 2013.
ISSN: ESSN 1932-6203
PubMed: 24223728
DOI: 10.1371/JOURNAL.PONE.0077781
Page generated: Mon Aug 19 23:12:39 2024

Last articles

Mg in 4Y52
Mg in 4Y30
Mg in 4Y2V
Mg in 4Y2X
Mg in 4Y2Y
Mg in 4Y2U
Mg in 4Y2T
Mg in 4Y2Q
Mg in 4Y2R
Mg in 4Y2S
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy