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Magnesium in PDB 4mkg: Crystal Structure of A Stable Adenylate Kinase Variant AKV8

Enzymatic activity of Crystal Structure of A Stable Adenylate Kinase Variant AKV8

All present enzymatic activity of Crystal Structure of A Stable Adenylate Kinase Variant AKV8:
2.7.4.3;

Protein crystallography data

The structure of Crystal Structure of A Stable Adenylate Kinase Variant AKV8, PDB code: 4mkg was solved by S.Moon, D.Jung, E.Bae, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.08 / 1.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.620, 61.320, 87.990, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 20.1

Other elements in 4mkg:

The structure of Crystal Structure of A Stable Adenylate Kinase Variant AKV8 also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Stable Adenylate Kinase Variant AKV8 (pdb code 4mkg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Stable Adenylate Kinase Variant AKV8, PDB code: 4mkg:

Magnesium binding site 1 out of 1 in 4mkg

Go back to Magnesium Binding Sites List in 4mkg
Magnesium binding site 1 out of 1 in the Crystal Structure of A Stable Adenylate Kinase Variant AKV8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Stable Adenylate Kinase Variant AKV8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:13.5
occ:1.00
O2G A:AP5303 2.3 12.9 1.0
O2B A:AP5303 2.3 10.8 1.0
O A:HOH439 2.3 13.4 1.0
O A:HOH434 2.4 11.8 1.0
O A:HOH445 2.5 15.2 1.0
O A:HOH412 2.5 13.0 1.0
PG A:AP5303 3.4 12.7 1.0
PB A:AP5303 3.6 10.8 1.0
O3B A:AP5303 3.8 11.7 1.0
N A:GLY14 3.9 8.2 1.0
O3G A:AP5303 3.9 12.5 1.0
CA A:GLY14 4.0 9.1 1.0
O A:HOH455 4.1 20.8 1.0
O1E A:AP5303 4.3 15.4 1.0
NH2 A:ARG160 4.3 14.5 1.0
NH2 A:ARG127 4.4 12.2 1.0
O2A A:AP5303 4.4 11.8 1.0
OD2 A:ASP84 4.5 13.6 1.0
O3A A:AP5303 4.5 10.8 1.0
OD1 A:ASP84 4.6 12.3 1.0
O A:HOH593 4.6 30.3 1.0
O1B A:AP5303 4.7 10.5 1.0
O3D A:AP5303 4.7 14.4 1.0
O A:HOH468 4.7 23.4 1.0
O2E A:AP5303 4.7 13.8 1.0
O1G A:AP5303 4.8 13.8 1.0
PE A:AP5303 4.8 14.7 1.0
CG A:ASP84 4.9 10.1 1.0
CB A:LYS13 4.9 9.7 1.0
PA A:AP5303 4.9 11.0 1.0
C A:LYS13 4.9 8.0 1.0

Reference:

S.Moon, D.Jung, G.N.Phillips, E.Bae. An Integrated Approach For Thermal Stabilization of A Mesophilic Adenylate Kinase. Proteins 2014.
ISSN: ESSN 1097-0134
PubMed: 24615904
DOI: 10.1002/PROT.24549
Page generated: Mon Dec 14 19:12:54 2020

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