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Magnesium in PDB 4nck: Crystal Structure of Pyrococcus Furiosis RAD50 R797G Mutation

Protein crystallography data

The structure of Crystal Structure of Pyrococcus Furiosis RAD50 R797G Mutation, PDB code: 4nck was solved by S.Classen, G.J.Williams, A.S.Arvai, R.S.Williams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.24 / 1.99
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.669, 68.065, 202.900, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 23

Other elements in 4nck:

The structure of Crystal Structure of Pyrococcus Furiosis RAD50 R797G Mutation also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Pyrococcus Furiosis RAD50 R797G Mutation (pdb code 4nck). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Pyrococcus Furiosis RAD50 R797G Mutation, PDB code: 4nck:

Magnesium binding site 1 out of 1 in 4nck

Go back to Magnesium Binding Sites List in 4nck
Magnesium binding site 1 out of 1 in the Crystal Structure of Pyrococcus Furiosis RAD50 R797G Mutation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pyrococcus Furiosis RAD50 R797G Mutation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg903

b:80.3
occ:1.00
HE1 B:PHE759 3.5 62.9 1.0
HB3 B:TYR843 3.6 59.1 1.0
OE2 B:GLU758 3.7 82.3 1.0
HZ B:PHE759 3.9 58.5 1.0
HG23 B:ILE755 3.9 55.0 1.0
HD23 B:LEU844 4.0 54.2 1.0
HD13 B:LEU806 4.0 54.7 1.0
O B:TYR843 4.2 48.1 1.0
CE1 B:PHE759 4.2 52.4 1.0
CZ B:PHE759 4.4 48.8 1.0
HD11 B:ILE847 4.4 42.4 1.0
CB B:TYR843 4.4 49.2 1.0
HG12 B:ILE755 4.5 55.8 1.0
HD12 B:LEU806 4.5 54.7 1.0
CD B:GLU758 4.5 81.2 1.0
HB2 B:TYR843 4.5 59.1 1.0
C B:TYR843 4.7 46.4 1.0
CD1 B:LEU806 4.7 45.6 1.0
OE1 B:GLU758 4.7 85.0 1.0
HA B:LEU844 4.7 50.0 1.0
HG21 B:ILE755 4.7 55.0 1.0
CG2 B:ILE755 4.7 45.8 1.0
HG13 B:ILE847 4.8 43.1 1.0
CD2 B:LEU844 4.8 45.1 1.0
HD11 B:LEU806 4.9 54.7 1.0
HD21 B:LEU844 5.0 54.2 1.0

Reference:

R.A.Deshpande, G.J.Williams, O.Limbo, R.S.Williams, J.Kuhnlein, J.H.Lee, S.Classen, G.Guenther, P.Russell, J.A.Tainer, T.T.Paull. Atp-Driven RAD50 Conformations Regulate Dna Tethering, End Resection, and Atm Checkpoint Signaling. Embo J. V. 33 482 2014.
ISSN: ISSN 0261-4189
PubMed: 24493214
DOI: 10.1002/EMBJ.201386100
Page generated: Mon Aug 19 23:32:26 2024

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