Magnesium in PDB 4nx8: Structure of A Ptp-Like Phytase From Bdellovibrio Bacteriovorus

All present enzymatic activity of Structure of A Ptp-Like Phytase From Bdellovibrio Bacteriovorus:
3.1.3.48;

The structure of Structure of A Ptp-Like Phytase From Bdellovibrio Bacteriovorus, PDB code: 4nx8 was solved by R.J.Gruninger, A.L.Lovering, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.22 / 1.70
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	53.640, 78.560, 69.820, 90.00, 93.13, 90.00
R / Rfree (%)	15.6 / 19.3

The binding sites of Magnesium atom in the Structure of A Ptp-Like Phytase From Bdellovibrio Bacteriovorus (pdb code 4nx8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of A Ptp-Like Phytase From Bdellovibrio Bacteriovorus, PDB code: 4nx8:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of A Ptp-Like Phytase From Bdellovibrio Bacteriovorus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Ptp-Like Phytase From Bdellovibrio Bacteriovorus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:48.5 occ:1.00 OD1 A:ASP110 1.9 28.7 1.0 O A:HOH534 2.1 41.4 1.0 O A:HOH535 2.2 39.7 1.0 O A:HOH484 2.3 34.0 1.0 O A:HOH533 2.5 34.0 1.0 CG A:ASP110 2.9 31.4 1.0 OD2 A:ASP110 3.2 32.4 1.0 OE1 A:GLU157 3.4 28.7 1.0 O A:HOH653 3.9 43.4 1.0 OG A:SER155 4.0 18.8 0.5 O A:HOH409 4.2 20.1 1.0 CB A:ASP110 4.2 27.5 1.0 CG A:PRO78 4.5 26.0 1.0 CA A:ASP110 4.5 26.0 1.0 OG A:SER155 4.6 18.5 0.5 CD A:GLU157 4.6 30.0 1.0 N A:ASP110 4.7 23.9 1.0 CB A:PRO78 5.0 23.6 1.0

Magnesium binding site 2 out of 3 in the Structure of A Ptp-Like Phytase From Bdellovibrio Bacteriovorus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of A Ptp-Like Phytase From Bdellovibrio Bacteriovorus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg303 b:47.9 occ:1.00 O A:HOH691 2.0 43.8 1.0 O A:HOH688 2.2 26.9 0.5 O A:HOH688 2.3 26.5 0.5 O B:HOH460 2.4 36.6 1.0 O A:HOH651 2.7 49.9 1.0 OE1 A:GLU130 4.0 28.9 1.0 OE2 A:GLU130 4.1 20.7 1.0 O B:HOH627 4.1 45.2 1.0 O A:ASP125 4.3 24.6 1.0 CD A:GLU130 4.5 24.0 1.0 O B:HOH633 4.5 48.7 1.0 OE2 B:GLU47 4.6 40.2 1.0

Magnesium binding site 3 out of 3 in the Structure of A Ptp-Like Phytase From Bdellovibrio Bacteriovorus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of A Ptp-Like Phytase From Bdellovibrio Bacteriovorus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:37.7 occ:1.00 OD1 B:ASP110 1.9 26.1 1.0 O B:HOH515 2.1 30.1 1.0 O B:HOH516 2.2 35.7 1.0 O B:HOH490 2.2 34.7 1.0 O B:HOH517 2.3 32.2 1.0 O B:HOH518 2.3 30.5 1.0 CG B:ASP110 2.9 29.1 1.0 OD2 B:ASP110 3.3 28.7 1.0 OE1 B:GLU157 3.4 30.1 1.0 OG B:SER155 4.0 17.1 0.6 O B:HOH482 4.1 19.1 1.0 CB B:ASP110 4.2 25.6 1.0 CA B:ASP110 4.5 23.0 1.0 OG B:SER155 4.5 18.6 0.4 CG B:PRO78 4.5 27.5 1.0 N B:ASP110 4.6 19.3 1.0 CD B:GLU157 4.6 34.1 1.0

R.J.Gruninger, J.Thibault, M.J.Capeness, R.Till, S.C.Mosimann, R.E.Sockett, B.L.Selinger, A.L.Lovering. Structural and Biochemical Analysis of A Unique Phosphatase From Bdellovibrio Bacteriovorus Reveals Its Structural and Functional Relationship with the Protein Tyrosine Phosphatase Class of Phytase. Plos One V. 9 94403 2014.
ISSN: ESSN 1932-6203
PubMed: 24718691
DOI: 10.1371/JOURNAL.PONE.0094403