Magnesium in PDB 4o2r: Structure of Mus Musculus Rheb G63V Mutant Bound to Gdp

The structure of Structure of Mus Musculus Rheb G63V Mutant Bound to Gdp, PDB code: 4o2r was solved by M.T.Mazhab-Jafari, C.B.Marshall, J.Ho, N.Ishiyama, V.Stambolic, M.Ikura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.70 / 2.25
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	70.334, 79.167, 57.301, 90.00, 90.00, 90.00
R / Rfree (%)	20.6 / 25.9

The binding sites of Magnesium atom in the Structure of Mus Musculus Rheb G63V Mutant Bound to Gdp (pdb code 4o2r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Mus Musculus Rheb G63V Mutant Bound to Gdp, PDB code: 4o2r:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Mus Musculus Rheb G63V Mutant Bound to Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Mus Musculus Rheb G63V Mutant Bound to Gdp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:20.0 occ:1.00 O A:HOH302 2.7 16.4 1.0 O A:HOH325 2.9 20.2 1.0 OG A:SER20 2.9 14.1 1.0 OD1 A:ASP60 2.9 13.7 1.0 O3B A:GDP201 2.9 15.2 1.0 O A:THR61 3.0 12.7 1.0 OD2 A:ASP60 3.2 10.2 1.0 O A:HOH382 3.3 19.2 1.0 CG A:ASP60 3.3 11.8 1.0 CE A:LYS19 3.6 16.3 1.0 N A:SER20 3.8 8.2 1.0 NZ A:LYS19 3.8 15.5 1.0 CB A:SER20 3.9 10.6 1.0 CB A:LYS19 4.0 7.6 1.0 PB A:GDP201 4.0 12.8 1.0 C A:THR61 4.1 13.3 1.0 CA A:SER20 4.3 10.0 1.0 O A:ASP60 4.4 11.5 1.0 O1B A:GDP201 4.4 15.4 1.0 O2B A:GDP201 4.4 13.6 1.0 C A:ASP60 4.5 11.2 1.0 C A:LYS19 4.6 9.6 1.0 CD A:LYS19 4.6 7.7 1.0 CB A:ASP60 4.7 11.6 1.0 N A:THR61 4.7 15.1 1.0 CG A:LYS19 4.7 7.0 1.0 O A:PRO37 4.8 18.3 1.0 CA A:ALA62 4.8 15.4 1.0 CA A:LYS19 4.9 6.5 1.0 N A:ALA62 4.9 14.8 1.0

Magnesium binding site 2 out of 2 in the Structure of Mus Musculus Rheb G63V Mutant Bound to Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Mus Musculus Rheb G63V Mutant Bound to Gdp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:28.5 occ:1.00 OD1 B:ASP60 2.8 20.7 1.0 OG B:SER20 2.8 18.7 1.0 OG1 B:THR38 2.9 28.0 1.0 O B:THR61 2.9 23.6 1.0 O B:HOH301 2.9 26.2 1.0 O3B B:GDP201 3.0 24.6 1.0 CB B:THR38 3.3 51.4 1.0 CG B:ASP60 3.4 20.9 1.0 OD2 B:ASP60 3.4 22.4 1.0 CE B:LYS19 3.6 14.9 1.0 CG2 B:THR38 3.8 39.6 1.0 NZ B:LYS19 4.0 16.9 1.0 C B:THR61 4.0 30.6 1.0 PB B:GDP201 4.1 20.7 1.0 CB B:SER20 4.1 20.0 1.0 N B:SER20 4.1 13.7 1.0 CB B:LYS19 4.1 13.5 1.0 O2B B:GDP201 4.2 21.7 1.0 O B:ASP60 4.2 20.9 1.0 C B:ASP60 4.4 18.2 1.0 O1B B:GDP201 4.4 21.3 1.0 CA B:SER20 4.5 14.4 1.0 N B:THR61 4.6 22.0 1.0 CB B:ASP60 4.7 18.9 1.0 C B:LYS19 4.7 14.1 1.0 CA B:THR38 4.8 59.6 1.0 CD B:LYS19 4.8 16.7 1.0 N B:ALA62 4.9 32.3 1.0 O B:HOH336 4.9 29.6 1.0 CA B:THR61 4.9 25.9 1.0 CA B:ALA62 4.9 44.2 1.0 CA B:ASP60 5.0 16.0 1.0 N B:THR38 5.0 59.3 1.0 CA B:LYS19 5.0 12.2 1.0

M.T.Mazhab-Jafari, C.B.Marshall, J.Ho, N.Ishiyama, V.Stambolic, M.Ikura. Structure-Guided Mutation of the Conserved G3-Box Glycine in Rheb Generates A Constitutively Activated Regulator of Mtor To Be Published.