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Magnesium in PDB 4odj: Crystal Structure of A Putative S-Adenosylmethionine Synthetase From Cryptosporidium Hominis in Complex with S-Adenosyl-Methionine

Enzymatic activity of Crystal Structure of A Putative S-Adenosylmethionine Synthetase From Cryptosporidium Hominis in Complex with S-Adenosyl-Methionine

All present enzymatic activity of Crystal Structure of A Putative S-Adenosylmethionine Synthetase From Cryptosporidium Hominis in Complex with S-Adenosyl-Methionine:
2.5.1.6;

Protein crystallography data

The structure of Crystal Structure of A Putative S-Adenosylmethionine Synthetase From Cryptosporidium Hominis in Complex with S-Adenosyl-Methionine, PDB code: 4odj was solved by Seattle Structural Gemomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 117.860, 117.860, 54.040, 90.00, 90.00, 120.00
R / Rfree (%) 14.4 / 16.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Putative S-Adenosylmethionine Synthetase From Cryptosporidium Hominis in Complex with S-Adenosyl-Methionine (pdb code 4odj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Putative S-Adenosylmethionine Synthetase From Cryptosporidium Hominis in Complex with S-Adenosyl-Methionine, PDB code: 4odj:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4odj

Go back to Magnesium Binding Sites List in 4odj
Magnesium binding site 1 out of 2 in the Crystal Structure of A Putative S-Adenosylmethionine Synthetase From Cryptosporidium Hominis in Complex with S-Adenosyl-Methionine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Putative S-Adenosylmethionine Synthetase From Cryptosporidium Hominis in Complex with S-Adenosyl-Methionine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:7.4
occ:1.00
 O2A A:3PO501 2.0 11.7 1.0
O3G A:3PO501 2.0 10.1 1.0
O2B A:3PO501 2.1 11.3 1.0
OD2 A:ASP36 2.1 9.5 1.0
O A:HOH839 2.1 9.8 1.0
O A:HOH745 2.2 10.3 1.0
CG A:ASP36 3.0 9.7 1.0
PB A:3PO501 3.1 11.2 1.0
PA A:3PO501 3.2 15.8 1.0
PG A:3PO501 3.3 10.5 1.0
OD1 A:ASP36 3.3 9.8 1.0
O3A A:3PO501 3.4 12.6 1.0
O3B A:3PO501 3.4 10.8 1.0
NZ A:LYS273 3.6 10.7 1.0
O A:HOH746 3.8 16.2 1.0
O1G A:3PO501 4.1 11.4 1.0
NH2 A:ARG272 4.1 12.6 1.0
O1A A:3PO501 4.2 12.7 1.0
CE1 A:HIS34 4.2 10.1 1.0
O5' A:3PO501 4.2 13.2 1.0
OD2 A:ASP266 4.3 15.2 1.0
CB A:ASP36 4.4 9.8 1.0
O2G A:3PO501 4.4 10.8 1.0
O A:ALA267 4.4 11.6 1.0
O1B A:3PO501 4.5 12.3 1.0
CB A:ARG272 4.5 10.0 1.0
CE A:LYS273 4.7 10.9 1.0
CZ A:ARG272 4.7 12.2 1.0
NE A:ARG272 4.7 12.3 1.0
O A:HOH842 4.7 8.8 1.0
NE2 A:HIS34 4.8 10.3 1.0
O A:ARG272 4.8 10.0 1.0
O A:HOH679 4.9 28.5 1.0

Magnesium binding site 2 out of 2 in 4odj

Go back to Magnesium Binding Sites List in 4odj
Magnesium binding site 2 out of 2 in the Crystal Structure of A Putative S-Adenosylmethionine Synthetase From Cryptosporidium Hominis in Complex with S-Adenosyl-Methionine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Putative S-Adenosylmethionine Synthetase From Cryptosporidium Hominis in Complex with S-Adenosyl-Methionine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg503

b:19.6
occ:1.00
 O A:HOH842 1.7 8.8 1.0
O A:HOH840 1.8 14.7 1.0
O1G A:3PO501 2.0 11.4 1.0
O A:HOH742 2.2 19.7 1.0
O1A A:3PO501 2.2 12.7 1.0
O A:HOH841 2.4 13.3 1.0
O A:HOH741 2.4 12.6 1.0
PG A:3PO501 3.4 10.5 1.0
PA A:3PO501 3.5 15.8 1.0
O3A A:3PO501 3.5 12.6 1.0
NZ A:LYS273 3.9 10.7 1.0
OE2 A:GLU28 3.9 13.5 1.0
O A:HOH644 3.9 19.2 1.0
O3B A:3PO501 4.0 10.8 1.0
O3G A:3PO501 4.2 10.1 1.0
O A:HOH620 4.2 11.9 1.0
NZ A:LYS189 4.2 11.3 1.0
O2G A:3PO501 4.4 10.8 1.0
O2A A:3PO501 4.4 11.7 1.0
PB A:3PO501 4.5 11.2 1.0
CE A:LYS273 4.6 10.9 1.0
OE1 A:GLU28 4.6 13.5 1.0
O5' A:3PO501 4.7 13.2 1.0
CD A:GLU28 4.7 13.7 1.0

Reference:

Seattle Structural Genomics Center For Infectious Disease(Ssgcid), J.Abendroth, T.Arakaki, D.Lorimer, T.E.Edewars. Crystal Structure of A Putative S-Adenosylmethionine Synthetase From Cryptosporidium Hominis in Complex with S-Adenosyl-Methionine To Be Published.
Page generated: Mon Dec 14 19:17:23 2020

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