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Magnesium in PDB 4oei: Crystal Structure of Plant Lectin From Cicer Arietinum at 2.6 Angstrom Resolution

Protein crystallography data

The structure of Crystal Structure of Plant Lectin From Cicer Arietinum at 2.6 Angstrom Resolution, PDB code: 4oei was solved by S.Kumar, D.Dube, A.Bhushan, S.Dey, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.30 / 2.60
Space group P 3
Cell size a, b, c (Å), α, β, γ (°) 80.600, 80.600, 69.200, 90.00, 90.00, 120.00
R / Rfree (%) 21.4 / 24.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Plant Lectin From Cicer Arietinum at 2.6 Angstrom Resolution (pdb code 4oei). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Plant Lectin From Cicer Arietinum at 2.6 Angstrom Resolution, PDB code: 4oei:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4oei

Go back to Magnesium Binding Sites List in 4oei
Magnesium binding site 1 out of 2 in the Crystal Structure of Plant Lectin From Cicer Arietinum at 2.6 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Plant Lectin From Cicer Arietinum at 2.6 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:2.2
occ:1.00
O A:ASP121 2.2 6.5 1.0
OD1 A:ASN7 2.2 24.1 1.0
O A:ASP174 2.4 16.4 1.0
O A:ASP65 2.4 14.0 1.0
O A:HOH429 2.5 22.9 1.0
O A:ASN7 2.5 13.8 1.0
CG A:ASN7 3.1 20.5 1.0
C A:ASP121 3.3 7.6 1.0
C A:ASP174 3.5 18.5 1.0
C A:ASN7 3.5 14.2 1.0
C A:ASP65 3.7 12.9 1.0
ND2 A:ASN7 3.7 23.0 1.0
CA A:ASP121 3.8 8.8 1.0
CA A:ASN7 3.9 16.1 1.0
CB A:ASN7 4.0 17.8 1.0
CA A:ASP174 4.2 19.7 1.0
CA A:ASP65 4.4 12.4 1.0
N A:ALA122 4.5 8.8 1.0
CB A:ASP121 4.5 7.7 1.0
O A:MET173 4.5 20.7 1.0
N A:SER175 4.5 17.8 1.0
CB A:ASP65 4.6 11.5 1.0
O A:ILE120 4.6 10.9 1.0
N A:CYS66 4.7 12.6 1.0
N A:ALA8 4.7 12.3 1.0
O A:HOH463 4.7 28.7 1.0
CA A:CYS66 4.8 11.5 1.0
CA A:SER175 4.8 17.2 1.0
CB A:CYS66 4.8 10.6 1.0
CA A:ALA122 4.8 7.3 1.0
CB A:ALA122 4.9 5.1 1.0

Magnesium binding site 2 out of 2 in 4oei

Go back to Magnesium Binding Sites List in 4oei
Magnesium binding site 2 out of 2 in the Crystal Structure of Plant Lectin From Cicer Arietinum at 2.6 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Plant Lectin From Cicer Arietinum at 2.6 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg302

b:4.6
occ:1.00
OD1 B:ASN7 2.3 18.6 1.0
O B:ASP65 2.4 15.8 1.0
O B:ASP174 2.4 22.0 1.0
O B:ASP121 2.5 9.9 1.0
O B:ASN7 2.5 11.1 1.0
O B:HOH488 2.5 24.0 1.0
CG B:ASN7 3.4 17.5 1.0
C B:ASP65 3.5 14.6 1.0
C B:ASN7 3.5 12.6 1.0
C B:ASP174 3.6 21.9 1.0
C B:ASP121 3.6 9.8 1.0
CA B:ASN7 3.9 15.2 1.0
CA B:ASP121 4.1 9.8 1.0
CB B:ASN7 4.2 15.4 1.0
CA B:ASP65 4.2 12.7 1.0
CA B:ASP174 4.2 22.6 1.0
ND2 B:ASN7 4.3 15.7 1.0
CB B:ASP65 4.4 10.4 1.0
O B:HOH484 4.6 23.8 1.0
N B:CYS66 4.6 14.5 1.0
N B:SER175 4.6 19.1 1.0
N B:ALA122 4.7 8.9 1.0
N B:ALA8 4.7 10.5 1.0
O B:ILE120 4.8 11.2 1.0
CB B:ASP121 4.8 10.2 1.0
CA B:CYS66 4.8 14.0 1.0
CA B:SER175 4.8 16.6 1.0
O B:MET173 4.9 22.0 1.0
CB B:ASP174 4.9 23.8 1.0
CB B:SER175 5.0 18.4 1.0

Reference:

S.Kumar, D.Dube, A.Bhushan, S.Dey, S.Sharma, T.P.Singh. Crystal Structure of Plant Lectin From Cicer Arietinum at 2.6 Angstrom Resolution To Be Published.
Page generated: Mon Aug 11 21:29:03 2025

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