Magnesium in PDB 4og2: The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Leucine

Protein crystallography data

The structure of The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Leucine, PDB code: 4og2 was solved by K.Tan, H.Li, R.Jedrzejczak, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.50 / 1.10
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 98.326, 101.124, 149.967, 90.00, 90.00, 90.00
R / Rfree (%) 12.9 / 15

Other elements in 4og2:

The structure of The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Leucine also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Leucine (pdb code 4og2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Leucine, PDB code: 4og2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4og2

Go back to Magnesium Binding Sites List in 4og2
Magnesium binding site 1 out of 2 in the The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Leucine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Leucine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:8.6
occ:0.88
O A:ILE388 2.3 10.8 1.0
O A:VAL166 2.3 9.2 1.0
O A:GLY163 2.3 10.8 1.0
O A:HOH678 2.3 11.3 1.0
O A:PRO160 2.4 9.8 1.0
C A:ILE388 3.3 10.4 1.0
C A:PRO160 3.4 9.4 1.0
C A:VAL166 3.4 8.0 1.0
C A:GLY163 3.5 10.1 1.0
CA A:PRO160 3.8 10.3 1.0
N A:VAL166 3.9 8.1 1.0
CA A:VAL166 4.0 8.3 1.0
CA A:ILE388 4.1 12.4 1.0
CB A:PRO160 4.1 12.4 1.0
N A:GLY389 4.1 10.1 1.0
CA A:GLY389 4.1 9.7 1.0
CB A:VAL166 4.1 9.1 1.0
CA A:ASP164 4.3 10.5 1.0
N A:ASP164 4.3 9.9 1.0
CB A:ILE388 4.3 15.7 1.0
N A:GLY163 4.4 10.0 1.0
C A:ASP164 4.4 9.4 1.0
O A:HOH642 4.4 14.4 1.0
O A:HOH635 4.5 11.5 1.0
N A:ALA167 4.5 7.7 1.0
CA A:GLY163 4.5 11.0 1.0
N A:GLU161 4.6 9.8 1.0
N A:TYR165 4.7 8.3 1.0
O A:ASP164 4.8 10.6 1.0
CA A:ALA167 4.9 8.2 1.0
C A:GLY389 4.9 9.1 1.0
CG1 A:VAL166 4.9 9.3 1.0

Magnesium binding site 2 out of 2 in 4og2

Go back to Magnesium Binding Sites List in 4og2
Magnesium binding site 2 out of 2 in the The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Leucine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Leucine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:9.7
occ:0.88
O B:ILE388 2.2 12.7 1.0
O B:VAL166 2.3 9.6 1.0
O B:GLY163 2.3 10.6 1.0
O B:HOH629 2.3 22.6 1.0
O B:PRO160 2.4 10.3 1.0
C B:ILE388 3.3 11.9 1.0
C B:VAL166 3.4 8.6 1.0
C B:PRO160 3.4 9.8 1.0
C B:GLY163 3.5 10.3 1.0
O B:HOH902 3.7 13.5 0.6
CA B:PRO160 3.7 11.2 1.0
N B:VAL166 3.9 8.9 1.0
CA B:VAL166 4.0 8.9 1.0
O B:HOH847 4.0 18.5 0.9
CA B:GLY389 4.0 10.8 1.0
O B:HOH782 4.0 18.9 0.7
CB B:PRO160 4.0 13.1 1.0
N B:GLY389 4.1 10.6 1.0
CB B:VAL166 4.2 9.7 1.0
CA B:ILE388 4.3 12.3 1.0
N B:ASP164 4.3 10.4 1.0
CA B:ASP164 4.3 11.5 1.0
N B:GLY163 4.4 10.6 1.0
C B:ASP164 4.4 10.8 1.0
N B:ALA167 4.5 8.8 1.0
CG1 B:ILE388 4.5 14.9 1.0
CA B:GLY163 4.5 11.4 1.0
N B:GLU161 4.6 10.5 1.0
O B:HOH984 4.6 17.9 1.0
N B:TYR165 4.8 9.6 1.0
O B:ASP164 4.8 12.5 1.0
CA B:ALA167 4.8 9.1 1.0
C B:GLY389 4.9 9.9 1.0
CB B:ILE388 4.9 12.9 1.0
CG1 B:VAL166 5.0 10.6 1.0

Reference:

K.Tan, H.Li, R.Jedrzejczak, A.Joachimiak. The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Leucine To Be Published.
Page generated: Mon Dec 14 19:17:39 2020

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