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Magnesium in PDB 4ojj: X-Ray Structure of the C-Terminal Domain of PAT1 (Decapping Activator)

Protein crystallography data

The structure of X-Ray Structure of the C-Terminal Domain of PAT1 (Decapping Activator), PDB code: 4ojj was solved by Z.Fourati-Kammoun, O.Kolesnikova, R.Back, J.Keller, N.Lazar, C.Gaudon-Plesse, B.Seraphin, M.Graille, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.86 / 2.32
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 36.430, 173.540, 175.440, 90.00, 90.00, 90.00
R / Rfree (%) 23 / 29.3

Other elements in 4ojj:

The structure of X-Ray Structure of the C-Terminal Domain of PAT1 (Decapping Activator) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure of the C-Terminal Domain of PAT1 (Decapping Activator) (pdb code 4ojj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Structure of the C-Terminal Domain of PAT1 (Decapping Activator), PDB code: 4ojj:

Magnesium binding site 1 out of 1 in 4ojj

Go back to Magnesium Binding Sites List in 4ojj
Magnesium binding site 1 out of 1 in the X-Ray Structure of the C-Terminal Domain of PAT1 (Decapping Activator)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of the C-Terminal Domain of PAT1 (Decapping Activator) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg901

b:34.2
occ:1.00
OE1 C:GLU674 1.7 51.8 1.0
O C:HOH1001 2.8 43.2 1.0
O C:HOH1121 2.8 50.3 1.0
CD C:GLU674 2.8 47.1 1.0
O C:HOH1105 3.0 54.3 1.0
OE2 C:GLU674 3.3 52.4 1.0
CD1 C:ILE722 3.8 33.3 1.0
O C:HOH1051 3.9 41.6 1.0
CG C:GLU674 4.1 45.8 1.0
CG1 C:ILE722 5.0 38.4 1.0

Reference:

Z.Fourati, O.Kolesnikova, R.Back, J.Keller, C.Charenton, V.Taverniti, C.G.Plesse, N.Lazar, D.Durand, H.Van Tilbeurgh, B.Seraphin, M.Graille. The C-Terminal Domain From S. Cerevisiae PAT1 Displays Two Conserved Regions Involved in Decapping Factor Recruitment. Plos One V. 9 96828 2014.
ISSN: ESSN 1932-6203
PubMed: 24830408
DOI: 10.1371/JOURNAL.PONE.0096828
Page generated: Mon Dec 14 19:18:04 2020

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