Magnesium in PDB 4oju: Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution
Protein crystallography data
The structure of Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution, PDB code: 4oju
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.42 /
2.00
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
57.635,
108.160,
108.192,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.7 /
19
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution
(pdb code 4oju). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the
Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution, PDB code: 4oju:
Jump to Magnesium binding site number:
1;
2;
3;
Magnesium binding site 1 out
of 3 in 4oju
Go back to
Magnesium Binding Sites List in 4oju
Magnesium binding site 1 out
of 3 in the Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution
![](/pictures/MG/pdb/oj/4oju-MG-sphere_01.jpg) Mono view
![](/pictures/MG/pdb/oj/4oju-MG-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg204
b:45.6
occ:1.00
|
O
|
D:HOH333
|
2.0
|
41.3
|
1.0
|
O
|
A:HOH331
|
2.1
|
31.4
|
1.0
|
OE2
|
D:GLU127
|
2.1
|
41.3
|
1.0
|
O
|
C:HOH305
|
2.2
|
38.8
|
1.0
|
OD2
|
A:ASP134
|
2.2
|
41.9
|
1.0
|
O
|
C:HOH307
|
2.3
|
43.5
|
1.0
|
CD
|
D:GLU127
|
3.2
|
56.4
|
1.0
|
CG
|
A:ASP134
|
3.2
|
40.7
|
1.0
|
OD1
|
A:ASP134
|
3.5
|
37.4
|
1.0
|
OE1
|
D:GLU127
|
3.5
|
45.7
|
1.0
|
NH2
|
D:ARG153
|
3.9
|
40.3
|
1.0
|
OD2
|
C:ASP159
|
4.0
|
60.5
|
0.5
|
OG
|
A:SER132
|
4.0
|
29.4
|
1.0
|
O
|
D:HOH408
|
4.1
|
28.9
|
0.5
|
NH1
|
D:ARG153
|
4.3
|
34.3
|
1.0
|
O
|
C:HOH309
|
4.4
|
61.1
|
1.0
|
ND2
|
A:ASN156
|
4.5
|
52.8
|
1.0
|
CG
|
D:GLU127
|
4.5
|
37.0
|
1.0
|
CB
|
A:ASP134
|
4.6
|
31.9
|
1.0
|
CZ
|
D:ARG153
|
4.6
|
50.2
|
1.0
|
OD1
|
A:ASN156
|
4.7
|
62.4
|
1.0
|
CG
|
C:ASP159
|
4.8
|
51.3
|
0.5
|
OD1
|
C:ASP159
|
4.9
|
51.5
|
0.5
|
CG
|
A:ASN156
|
4.9
|
66.5
|
1.0
|
OD1
|
A:ASN111
|
4.9
|
36.9
|
1.0
|
|
Magnesium binding site 2 out
of 3 in 4oju
Go back to
Magnesium Binding Sites List in 4oju
Magnesium binding site 2 out
of 3 in the Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution
![](/pictures/MG/pdb/oj/4oju-MG-sphere_02.jpg) Mono view
![](/pictures/MG/pdb/oj/4oju-MG-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg205
b:40.5
occ:1.00
|
O
|
A:HOH419
|
2.4
|
41.9
|
1.0
|
O
|
A:HOH319
|
2.5
|
26.8
|
1.0
|
O
|
B:HOH311
|
2.5
|
24.8
|
1.0
|
O
|
A:HOH412
|
2.6
|
39.1
|
1.0
|
O
|
B:HOH375
|
2.6
|
39.4
|
1.0
|
O
|
A:HOH413
|
2.7
|
40.5
|
1.0
|
CE
|
A:MSE163
|
3.6
|
47.5
|
0.5
|
CG
|
B:MSE163
|
3.7
|
34.2
|
0.5
|
CG
|
A:MSE163
|
4.2
|
36.2
|
0.5
|
CA
|
A:ALA143
|
4.3
|
26.3
|
1.0
|
CA
|
B:ALA143
|
4.3
|
23.3
|
1.0
|
CB
|
B:MSE163
|
4.3
|
35.1
|
0.5
|
CB
|
A:MSE163
|
4.3
|
30.4
|
0.5
|
O
|
B:ALA143
|
4.3
|
28.8
|
1.0
|
O
|
B:GLU164
|
4.3
|
38.4
|
1.0
|
CB
|
A:MSE163
|
4.4
|
33.6
|
0.5
|
O
|
A:ALA143
|
4.4
|
28.8
|
1.0
|
CB
|
B:MSE163
|
4.4
|
29.6
|
0.5
|
O
|
A:GLU164
|
4.4
|
39.8
|
0.5
|
O
|
A:GLU164
|
4.5
|
39.9
|
0.5
|
O
|
A:PRO142
|
4.7
|
24.5
|
1.0
|
O
|
B:HOH303
|
4.7
|
44.6
|
1.0
|
O
|
B:PRO142
|
4.7
|
23.1
|
1.0
|
C
|
A:ALA143
|
4.8
|
28.1
|
1.0
|
C
|
B:ALA143
|
4.8
|
28.0
|
1.0
|
O
|
A:HOH414
|
4.9
|
40.6
|
1.0
|
O
|
A:HOH417
|
4.9
|
44.7
|
1.0
|
CE
|
B:MSE163
|
4.9
|
50.4
|
0.5
|
CG
|
A:MSE163
|
4.9
|
42.0
|
0.5
|
CB
|
A:ALA143
|
5.0
|
28.1
|
1.0
|
|
Magnesium binding site 3 out
of 3 in 4oju
Go back to
Magnesium Binding Sites List in 4oju
Magnesium binding site 3 out
of 3 in the Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution
![](/pictures/MG/pdb/oj/4oju-MG-sphere_03.jpg) Mono view
![](/pictures/MG/pdb/oj/4oju-MG-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg202
b:43.9
occ:1.00
|
O
|
B:HOH367
|
2.1
|
41.6
|
1.0
|
O
|
A:HOH416
|
2.1
|
36.7
|
1.0
|
OD2
|
C:ASP134
|
2.1
|
38.9
|
1.0
|
O
|
C:HOH390
|
2.2
|
31.1
|
1.0
|
O
|
C:HOH306
|
2.2
|
45.7
|
1.0
|
OE2
|
B:GLU127
|
2.2
|
39.9
|
1.0
|
CG
|
C:ASP134
|
3.1
|
40.6
|
1.0
|
CD
|
B:GLU127
|
3.2
|
47.4
|
1.0
|
OD1
|
C:ASP134
|
3.4
|
40.7
|
1.0
|
OE1
|
B:GLU127
|
3.6
|
41.5
|
1.0
|
OD2
|
A:ASP159
|
3.7
|
47.1
|
0.5
|
NH2
|
B:ARG153
|
3.9
|
35.4
|
1.0
|
O
|
C:HOH368
|
4.1
|
15.4
|
0.5
|
OG
|
C:SER132
|
4.1
|
27.5
|
1.0
|
O
|
C:HOH386
|
4.3
|
49.8
|
1.0
|
NH1
|
B:ARG153
|
4.4
|
27.8
|
1.0
|
CB
|
C:ASP134
|
4.5
|
30.0
|
1.0
|
CG
|
A:ASP159
|
4.5
|
46.6
|
0.5
|
CG
|
B:GLU127
|
4.6
|
34.6
|
1.0
|
OD1
|
A:ASP159
|
4.6
|
49.3
|
0.5
|
CZ
|
B:ARG153
|
4.6
|
43.7
|
1.0
|
OD1
|
C:ASN111
|
4.9
|
32.7
|
1.0
|
O
|
A:HOH423
|
5.0
|
54.5
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Tue Aug 20 00:52:45 2024
|