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Magnesium in PDB 4oju: Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution, PDB code: 4oju was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.42 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.635, 108.160, 108.192, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 19

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution (pdb code 4oju). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution, PDB code: 4oju:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 4oju

Go back to Magnesium Binding Sites List in 4oju
Magnesium binding site 1 out of 3 in the Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg204

b:45.6
occ:1.00
O D:HOH333 2.0 41.3 1.0
O A:HOH331 2.1 31.4 1.0
OE2 D:GLU127 2.1 41.3 1.0
O C:HOH305 2.2 38.8 1.0
OD2 A:ASP134 2.2 41.9 1.0
O C:HOH307 2.3 43.5 1.0
CD D:GLU127 3.2 56.4 1.0
CG A:ASP134 3.2 40.7 1.0
OD1 A:ASP134 3.5 37.4 1.0
OE1 D:GLU127 3.5 45.7 1.0
NH2 D:ARG153 3.9 40.3 1.0
OD2 C:ASP159 4.0 60.5 0.5
OG A:SER132 4.0 29.4 1.0
O D:HOH408 4.1 28.9 0.5
NH1 D:ARG153 4.3 34.3 1.0
O C:HOH309 4.4 61.1 1.0
ND2 A:ASN156 4.5 52.8 1.0
CG D:GLU127 4.5 37.0 1.0
CB A:ASP134 4.6 31.9 1.0
CZ D:ARG153 4.6 50.2 1.0
OD1 A:ASN156 4.7 62.4 1.0
CG C:ASP159 4.8 51.3 0.5
OD1 C:ASP159 4.9 51.5 0.5
CG A:ASN156 4.9 66.5 1.0
OD1 A:ASN111 4.9 36.9 1.0

Magnesium binding site 2 out of 3 in 4oju

Go back to Magnesium Binding Sites List in 4oju
Magnesium binding site 2 out of 3 in the Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg205

b:40.5
occ:1.00
O A:HOH419 2.4 41.9 1.0
O A:HOH319 2.5 26.8 1.0
O B:HOH311 2.5 24.8 1.0
O A:HOH412 2.6 39.1 1.0
O B:HOH375 2.6 39.4 1.0
O A:HOH413 2.7 40.5 1.0
CE A:MSE163 3.6 47.5 0.5
CG B:MSE163 3.7 34.2 0.5
CG A:MSE163 4.2 36.2 0.5
CA A:ALA143 4.3 26.3 1.0
CA B:ALA143 4.3 23.3 1.0
CB B:MSE163 4.3 35.1 0.5
CB A:MSE163 4.3 30.4 0.5
O B:ALA143 4.3 28.8 1.0
O B:GLU164 4.3 38.4 1.0
CB A:MSE163 4.4 33.6 0.5
O A:ALA143 4.4 28.8 1.0
CB B:MSE163 4.4 29.6 0.5
O A:GLU164 4.4 39.8 0.5
O A:GLU164 4.5 39.9 0.5
O A:PRO142 4.7 24.5 1.0
O B:HOH303 4.7 44.6 1.0
O B:PRO142 4.7 23.1 1.0
C A:ALA143 4.8 28.1 1.0
C B:ALA143 4.8 28.0 1.0
O A:HOH414 4.9 40.6 1.0
O A:HOH417 4.9 44.7 1.0
CE B:MSE163 4.9 50.4 0.5
CG A:MSE163 4.9 42.0 0.5
CB A:ALA143 5.0 28.1 1.0

Magnesium binding site 3 out of 3 in 4oju

Go back to Magnesium Binding Sites List in 4oju
Magnesium binding site 3 out of 3 in the Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of A Hypothetical Leucine Rich Repeat Protein (BACCAP_00569) From Bacteroides Capillosus Atcc 29799 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg202

b:43.9
occ:1.00
O B:HOH367 2.1 41.6 1.0
O A:HOH416 2.1 36.7 1.0
OD2 C:ASP134 2.1 38.9 1.0
O C:HOH390 2.2 31.1 1.0
O C:HOH306 2.2 45.7 1.0
OE2 B:GLU127 2.2 39.9 1.0
CG C:ASP134 3.1 40.6 1.0
CD B:GLU127 3.2 47.4 1.0
OD1 C:ASP134 3.4 40.7 1.0
OE1 B:GLU127 3.6 41.5 1.0
OD2 A:ASP159 3.7 47.1 0.5
NH2 B:ARG153 3.9 35.4 1.0
O C:HOH368 4.1 15.4 0.5
OG C:SER132 4.1 27.5 1.0
O C:HOH386 4.3 49.8 1.0
NH1 B:ARG153 4.4 27.8 1.0
CB C:ASP134 4.5 30.0 1.0
CG A:ASP159 4.5 46.6 0.5
CG B:GLU127 4.6 34.6 1.0
OD1 A:ASP159 4.6 49.3 0.5
CZ B:ARG153 4.6 43.7 1.0
OD1 C:ASN111 4.9 32.7 1.0
O A:HOH423 5.0 54.5 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Aug 20 00:52:45 2024

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