Atomistry » Magnesium » PDB 4ohf-4osl » 4ooj
Atomistry »
  Magnesium »
    PDB 4ohf-4osl »
      4ooj »

Magnesium in PDB 4ooj: Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution

Protein crystallography data

The structure of Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution, PDB code: 4ooj was solved by E.M.Gazdag, S.Shoebel, A.V.Shkumatov, R.S.Goody, A.Itzen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.90 / 2.40
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 119.055, 119.055, 201.700, 90.00, 90.00, 120.00
R / Rfree (%) 20 / 26.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution (pdb code 4ooj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution, PDB code: 4ooj:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 4ooj

Go back to Magnesium Binding Sites List in 4ooj
Magnesium binding site 1 out of 4 in the Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg701

b:63.5
occ:1.00
OD2 A:ASP168 3.3 43.1 1.0
SG A:CYS46 3.9 46.9 1.0
OD1 A:ASP168 3.9 37.8 1.0
CG A:ASP168 4.0 37.5 1.0
CB A:CYS46 4.2 41.0 1.0
CD2 A:PHE170 4.3 36.0 1.0
CD2 B:LEU299 4.4 56.1 1.0
OH A:TYR187 4.4 41.9 1.0
OD2 B:ASP315 4.5 46.7 1.0
CE2 A:TYR187 4.5 36.9 1.0
CD1 B:LEU299 4.6 51.7 1.0
CZ A:TYR187 4.6 39.4 1.0
NE2 A:HIS444 4.7 34.3 1.0
CB B:ASP315 4.8 47.5 1.0
CE2 A:PHE170 5.0 37.8 1.0

Magnesium binding site 2 out of 4 in 4ooj

Go back to Magnesium Binding Sites List in 4ooj
Magnesium binding site 2 out of 4 in the Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg701

b:70.2
occ:1.00
OD2 B:ASP168 3.1 42.1 1.0
OD1 B:ASP168 3.7 38.4 1.0
SG B:CYS46 3.8 47.5 1.0
CG B:ASP168 3.8 37.9 1.0
CB B:CYS46 3.9 40.6 1.0
CD2 B:PHE170 4.2 34.1 1.0
OH B:TYR187 4.5 42.6 1.0
CE2 B:TYR187 4.6 37.3 1.0
OD2 A:ASP315 4.6 49.8 1.0
CD1 A:LEU299 4.6 51.9 1.0
NE2 B:HIS444 4.7 35.2 1.0
CZ B:TYR187 4.7 38.7 1.0
CD2 A:LEU299 4.8 53.9 1.0
CE2 B:PHE170 4.9 38.3 1.0
CG B:PHE170 4.9 36.0 1.0
CB B:PHE170 4.9 35.3 1.0
CB A:ASP315 4.9 46.4 1.0

Magnesium binding site 3 out of 4 in 4ooj

Go back to Magnesium Binding Sites List in 4ooj
Magnesium binding site 3 out of 4 in the Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg701

b:62.2
occ:1.00
O C:HOH885 3.0 44.4 1.0
OD2 C:ASP168 3.4 45.0 1.0
SG C:CYS46 4.0 53.8 1.0
CG C:ASP168 4.1 43.1 1.0
OD1 C:ASP168 4.2 43.1 1.0
OH C:TYR187 4.2 37.3 1.0
CD2 C:PHE170 4.2 36.6 1.0
CB C:CYS46 4.3 44.5 1.0
CD1 D:LEU299 4.4 50.1 1.0
CE2 C:TYR187 4.5 40.0 1.0
CD2 D:LEU299 4.5 50.4 1.0
OD2 D:ASP315 4.5 51.5 1.0
CZ C:TYR187 4.5 38.7 1.0
NE2 C:HIS444 4.7 47.4 1.0
CB D:ASP315 4.8 46.6 1.0
CE2 C:PHE170 4.9 40.0 1.0

Magnesium binding site 4 out of 4 in 4ooj

Go back to Magnesium Binding Sites List in 4ooj
Magnesium binding site 4 out of 4 in the Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg701

b:65.8
occ:1.00
O D:HOH894 2.4 45.7 1.0
OD2 D:ASP168 3.4 43.4 1.0
SG D:CYS46 4.1 53.9 1.0
CD2 C:LEU299 4.1 49.6 1.0
OH D:TYR187 4.2 38.9 1.0
CG D:ASP168 4.2 41.5 1.0
OD1 D:ASP168 4.3 45.3 1.0
CD2 D:PHE170 4.4 37.0 1.0
CB D:CYS46 4.4 43.9 1.0
CE2 D:TYR187 4.4 42.7 1.0
CZ D:TYR187 4.5 42.7 1.0
OD2 C:ASP315 4.5 48.6 1.0
CD1 C:LEU299 4.6 51.4 1.0
CB C:ASP315 4.8 46.3 1.0
NE2 D:HIS444 4.9 42.8 1.0
CE2 D:PHE170 4.9 42.2 1.0

Reference:

E.M.Gazdag, S.Schobel, A.V.Shkumatov, R.S.Goody, A.Itzen. The Structure of the N-Terminal Domain of the Legionella Protein Sidc J.Struct.Biol. V. 186 188 2014.
ISSN: ISSN 1047-8477
PubMed: 24556577
DOI: 10.1016/J.JSB.2014.02.003
Page generated: Tue Aug 20 00:56:34 2024

Last articles

Ca in 2RIB
Ca in 2RIA
Ca in 2RF7
Ca in 2RI8
Ca in 2RI9
Ca in 2RGD
Ca in 2RGE
Ca in 2RGC
Ca in 2RGB
Ca in 2RGA
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy