Magnesium in PDB 4ooj: Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution

The structure of Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution, PDB code: 4ooj was solved by E.M.Gazdag, S.Shoebel, A.V.Shkumatov, R.S.Goody, A.Itzen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.90 / 2.40
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	119.055, 119.055, 201.700, 90.00, 90.00, 120.00
R / Rfree (%)	20 / 26.2

The binding sites of Magnesium atom in the Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution (pdb code 4ooj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution, PDB code: 4ooj:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:63.5 occ:1.00 OD2 A:ASP168 3.3 43.1 1.0 SG A:CYS46 3.9 46.9 1.0 OD1 A:ASP168 3.9 37.8 1.0 CG A:ASP168 4.0 37.5 1.0 CB A:CYS46 4.2 41.0 1.0 CD2 A:PHE170 4.3 36.0 1.0 CD2 B:LEU299 4.4 56.1 1.0 OH A:TYR187 4.4 41.9 1.0 OD2 B:ASP315 4.5 46.7 1.0 CE2 A:TYR187 4.5 36.9 1.0 CD1 B:LEU299 4.6 51.7 1.0 CZ A:TYR187 4.6 39.4 1.0 NE2 A:HIS444 4.7 34.3 1.0 CB B:ASP315 4.8 47.5 1.0 CE2 A:PHE170 5.0 37.8 1.0

Magnesium binding site 2 out of 4 in the Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg701 b:70.2 occ:1.00 OD2 B:ASP168 3.1 42.1 1.0 OD1 B:ASP168 3.7 38.4 1.0 SG B:CYS46 3.8 47.5 1.0 CG B:ASP168 3.8 37.9 1.0 CB B:CYS46 3.9 40.6 1.0 CD2 B:PHE170 4.2 34.1 1.0 OH B:TYR187 4.5 42.6 1.0 CE2 B:TYR187 4.6 37.3 1.0 OD2 A:ASP315 4.6 49.8 1.0 CD1 A:LEU299 4.6 51.9 1.0 NE2 B:HIS444 4.7 35.2 1.0 CZ B:TYR187 4.7 38.7 1.0 CD2 A:LEU299 4.8 53.9 1.0 CE2 B:PHE170 4.9 38.3 1.0 CG B:PHE170 4.9 36.0 1.0 CB B:PHE170 4.9 35.3 1.0 CB A:ASP315 4.9 46.4 1.0

Magnesium binding site 3 out of 4 in the Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg701 b:62.2 occ:1.00 O C:HOH885 3.0 44.4 1.0 OD2 C:ASP168 3.4 45.0 1.0 SG C:CYS46 4.0 53.8 1.0 CG C:ASP168 4.1 43.1 1.0 OD1 C:ASP168 4.2 43.1 1.0 OH C:TYR187 4.2 37.3 1.0 CD2 C:PHE170 4.2 36.6 1.0 CB C:CYS46 4.3 44.5 1.0 CD1 D:LEU299 4.4 50.1 1.0 CE2 C:TYR187 4.5 40.0 1.0 CD2 D:LEU299 4.5 50.4 1.0 OD2 D:ASP315 4.5 51.5 1.0 CZ C:TYR187 4.5 38.7 1.0 NE2 C:HIS444 4.7 47.4 1.0 CB D:ASP315 4.8 46.6 1.0 CE2 C:PHE170 4.9 40.0 1.0

Magnesium binding site 4 out of 4 in the Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of the N-Terminal Domain of the Legionella Pneumophila Protein Sidc at 2.4A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg701 b:65.8 occ:1.00 O D:HOH894 2.4 45.7 1.0 OD2 D:ASP168 3.4 43.4 1.0 SG D:CYS46 4.1 53.9 1.0 CD2 C:LEU299 4.1 49.6 1.0 OH D:TYR187 4.2 38.9 1.0 CG D:ASP168 4.2 41.5 1.0 OD1 D:ASP168 4.3 45.3 1.0 CD2 D:PHE170 4.4 37.0 1.0 CB D:CYS46 4.4 43.9 1.0 CE2 D:TYR187 4.4 42.7 1.0 CZ D:TYR187 4.5 42.7 1.0 OD2 C:ASP315 4.5 48.6 1.0 CD1 C:LEU299 4.6 51.4 1.0 CB C:ASP315 4.8 46.3 1.0 NE2 D:HIS444 4.9 42.8 1.0 CE2 D:PHE170 4.9 42.2 1.0

E.M.Gazdag, S.Schobel, A.V.Shkumatov, R.S.Goody, A.Itzen. The Structure of the N-Terminal Domain of the Legionella Protein Sidc J.Struct.Biol. V. 186 188 2014.
ISSN: ISSN 1047-8477
PubMed: 24556577
DOI: 10.1016/J.JSB.2014.02.003