Magnesium in PDB 4oxd: Structure of the Ldcb Ld-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition

The structure of Structure of the Ldcb Ld-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition, PDB code: 4oxd was solved by C.N.Hoyland, C.Aldridge, R.M.Cleverley, K.Sidiq, M.C.Duchene, R.A.Daniel, W.Vollmer, R.J.Lewis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.80 / 2.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	345.954, 42.549, 79.318, 90.00, 93.07, 90.00
R / Rfree (%)	27.3 / 33.4

The structure of Structure of the Ldcb Ld-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition also contains other interesting chemical elements:

Chlorine	(Cl)	2 atoms
Zinc	(Zn)	18 atoms

The binding sites of Magnesium atom in the Structure of the Ldcb Ld-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition (pdb code 4oxd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Ldcb Ld-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition, PDB code: 4oxd:

Magnesium binding site 1 out of 1 in the Structure of the Ldcb Ld-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Ldcb Ld-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg304 b:33.6 occ:1.00 OG1 A:THR124 2.6 44.2 1.0 OG A:SER121 3.5 35.3 1.0 N A:SER121 3.5 36.9 1.0 O A:HOH420 3.6 32.9 1.0 CB A:THR124 3.6 43.9 1.0 CA B:GLY109 3.9 43.1 1.0 CA A:ARG120 4.0 38.6 1.0 CB A:SER121 4.1 35.9 1.0 CG2 A:THR124 4.1 44.0 1.0 O A:PHE119 4.1 36.4 1.0 C A:ARG120 4.3 37.9 1.0 N B:GLY109 4.3 43.2 1.0 CE2 A:PHE119 4.4 36.7 1.0 CA A:SER121 4.4 36.3 1.0 O B:ALA108 4.4 43.2 1.0 CD2 A:PHE119 4.5 36.6 1.0 C B:ALA108 4.5 43.0 1.0 C A:PHE119 4.8 36.7 1.0 N A:ARG120 4.9 37.5 1.0 CB A:ARG120 4.9 40.3 1.0 CA A:THR124 4.9 43.5 1.0 CG A:ARG120 5.0 41.9 1.0

C.N.Hoyland, C.Aldridge, R.M.Cleverley, M.C.Duchene, G.Minasov, O.Onopriyenko, K.Sidiq, P.J.Stogios, W.F.Anderson, R.A.Daniel, A.Savchenko, W.Vollmer, R.J.Lewis. Structure of the Ldcb Ld-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition. Structure V. 22 949 2014.
ISSN: ISSN 0969-2126
PubMed: 24909784
DOI: 10.1016/J.STR.2014.04.015