Magnesium in PDB 4p4o: Crystal Structure of Leishmania Infantum Polymerase Beta: Ternary Gap Complex

The structure of Crystal Structure of Leishmania Infantum Polymerase Beta: Ternary Gap Complex, PDB code: 4p4o was solved by E.Mejia, M.Burak, A.Alonso, V.Larraga, T.Kunkel, K.Bebenek, M.Garcia-Diaz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.06 / 2.30
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	108.680, 108.680, 151.641, 90.00, 90.00, 120.00
R / Rfree (%)	19.4 / 22.8

The structure of Crystal Structure of Leishmania Infantum Polymerase Beta: Ternary Gap Complex also contains other interesting chemical elements:

Sodium

(Na)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of Leishmania Infantum Polymerase Beta: Ternary Gap Complex (pdb code 4p4o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Leishmania Infantum Polymerase Beta: Ternary Gap Complex, PDB code: 4p4o:

Magnesium binding site 1 out of 1 in the Crystal Structure of Leishmania Infantum Polymerase Beta: Ternary Gap Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Leishmania Infantum Polymerase Beta: Ternary Gap Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:20.4 occ:1.00 O1A A:D3T401 2.1 16.6 1.0 O1G A:D3T401 2.1 25.2 1.0 OD2 A:ASP196 2.2 20.1 1.0 O1B A:D3T401 2.2 18.0 1.0 OD1 A:ASP194 2.3 24.9 1.0 O A:HOH578 2.4 19.5 1.0 CG A:ASP194 3.1 28.4 1.0 PB A:D3T401 3.2 20.1 1.0 CG A:ASP196 3.2 20.2 1.0 PG A:D3T401 3.3 20.8 1.0 PA A:D3T401 3.3 17.8 1.0 OD2 A:ASP194 3.4 40.4 1.0 O3A A:D3T401 3.6 16.1 1.0 O3B A:D3T401 3.6 27.7 1.0 OD1 A:ASP196 3.7 22.4 1.0 C5' A:D3T401 4.0 17.9 1.0 O A:HOH615 4.0 26.9 1.0 O A:HOH602 4.1 23.8 1.0 O5' A:D3T401 4.1 20.3 1.0 O A:ASP194 4.2 19.4 1.0 O3G A:D3T401 4.2 21.1 1.0 CA A:GLY183 4.3 14.3 1.0 N A:ASP194 4.3 19.1 1.0 O2G A:D3T401 4.3 29.4 1.0 N A:SER184 4.4 18.1 1.0 C A:ASP194 4.4 17.4 1.0 CB A:ASP194 4.4 22.8 1.0 CB A:ASP196 4.5 18.6 1.0 O A:HOH556 4.5 13.8 1.0 O2A A:D3T401 4.5 20.4 1.0 CA A:ASP194 4.6 16.9 1.0 O2B A:D3T401 4.6 24.4 1.0 OG A:SER184 4.6 24.7 1.0 C A:GLY183 4.9 15.4 1.0 N A:ASP196 4.9 17.8 1.0

E.Mejia, M.Burak, A.Alonso, V.Larraga, T.A.Kunkel, K.Bebenek, M.Garcia-Diaz. Structures of the Leishmania Infantum Polymerase Beta. Dna Repair (Amst.) V. 18 1 2014.
ISSN: ISSN 1568-7856
PubMed: 24666693
DOI: 10.1016/J.DNAREP.2014.03.001