Magnesium in PDB 4pj0: Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing
Enzymatic activity of Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing
All present enzymatic activity of Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing:
1.10.3.9;
Protein crystallography data
The structure of Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing, PDB code: 4pj0
was solved by
J.Hellmich,
M.Bommer,
A.Burkhardt,
M.Ibrahim,
J.Kern,
A.Meents,
F.Mueh,
H.Dobbek,
A.Zouni,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.12 /
2.44
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
116.447,
218.889,
302.202,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
21.6 /
25.6
|
Other elements in 4pj0:
The structure of Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing also contains other interesting chemical elements:
Magnesium Binding Sites:
Magnesium binding site 1 out
of 70 in 4pj0
Go back to
Magnesium Binding Sites List in 4pj0
Magnesium binding site 1 out
of 70 in the Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg606
b:25.7
occ:1.00
|
MG
|
A:CLA606
|
0.0
|
25.7
|
1.0
|
NB
|
A:CLA606
|
1.9
|
34.0
|
1.0
|
ND
|
A:CLA606
|
1.9
|
27.4
|
1.0
|
NE2
|
A:HIS198
|
2.0
|
33.2
|
1.0
|
NC
|
A:CLA606
|
2.0
|
30.4
|
1.0
|
NA
|
A:CLA606
|
2.0
|
29.9
|
1.0
|
CE1
|
A:HIS198
|
2.7
|
27.2
|
1.0
|
C4D
|
A:CLA606
|
2.9
|
26.4
|
1.0
|
C1C
|
A:CLA606
|
3.0
|
29.1
|
1.0
|
C4B
|
A:CLA606
|
3.0
|
25.3
|
1.0
|
C1A
|
A:CLA606
|
3.0
|
28.8
|
1.0
|
C1B
|
A:CLA606
|
3.0
|
32.5
|
1.0
|
C4A
|
A:CLA606
|
3.1
|
31.3
|
1.0
|
CD2
|
A:HIS198
|
3.1
|
25.3
|
1.0
|
C1D
|
A:CLA606
|
3.1
|
26.1
|
1.0
|
C4C
|
A:CLA606
|
3.1
|
29.4
|
1.0
|
CHC
|
A:CLA606
|
3.4
|
26.0
|
1.0
|
CHA
|
A:CLA606
|
3.4
|
28.0
|
1.0
|
CHB
|
A:CLA606
|
3.4
|
24.2
|
1.0
|
CHD
|
A:CLA606
|
3.6
|
24.9
|
1.0
|
ND1
|
A:HIS198
|
3.9
|
30.1
|
1.0
|
CE
|
A:MET183
|
4.0
|
24.7
|
1.0
|
CG
|
A:HIS198
|
4.1
|
29.0
|
1.0
|
C3D
|
A:CLA606
|
4.1
|
22.7
|
1.0
|
C3B
|
A:CLA606
|
4.2
|
30.2
|
1.0
|
C2B
|
A:CLA606
|
4.2
|
28.1
|
1.0
|
C2D
|
A:CLA606
|
4.2
|
26.9
|
1.0
|
C2C
|
A:CLA606
|
4.3
|
29.9
|
1.0
|
C3C
|
A:CLA606
|
4.3
|
24.4
|
1.0
|
C3A
|
A:CLA606
|
4.4
|
29.2
|
1.0
|
C2A
|
A:CLA606
|
4.4
|
27.6
|
1.0
|
CAB
|
D:CLA404
|
4.4
|
28.5
|
1.0
|
CBD
|
A:CLA606
|
4.9
|
27.0
|
1.0
|
CBB
|
D:CLA404
|
4.9
|
23.8
|
1.0
|
|
Magnesium binding site 2 out
of 70 in 4pj0
Go back to
Magnesium Binding Sites List in 4pj0
Magnesium binding site 2 out
of 70 in the Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg607
b:33.8
occ:1.00
|
MG
|
A:CLA607
|
0.0
|
33.8
|
1.0
|
NB
|
A:CLA607
|
1.9
|
35.6
|
1.0
|
ND
|
A:CLA607
|
1.9
|
37.9
|
1.0
|
NC
|
A:CLA607
|
2.0
|
30.8
|
1.0
|
NA
|
A:CLA607
|
2.0
|
36.3
|
1.0
|
C4D
|
A:CLA607
|
2.9
|
33.2
|
1.0
|
C1C
|
A:CLA607
|
3.0
|
30.1
|
1.0
|
C4B
|
A:CLA607
|
3.0
|
31.4
|
1.0
|
C1A
|
A:CLA607
|
3.0
|
36.9
|
1.0
|
C1B
|
A:CLA607
|
3.0
|
36.1
|
1.0
|
C4A
|
A:CLA607
|
3.1
|
30.3
|
1.0
|
C1D
|
A:CLA607
|
3.1
|
29.6
|
1.0
|
C4C
|
A:CLA607
|
3.1
|
33.8
|
1.0
|
CHA
|
A:CLA607
|
3.4
|
32.8
|
1.0
|
CHC
|
A:CLA607
|
3.4
|
30.8
|
1.0
|
CHB
|
A:CLA607
|
3.4
|
39.1
|
1.0
|
CHD
|
A:CLA607
|
3.6
|
25.9
|
1.0
|
CBB
|
D:PHO402
|
4.0
|
26.5
|
1.0
|
C3D
|
A:CLA607
|
4.1
|
34.7
|
1.0
|
C3B
|
A:CLA607
|
4.2
|
33.1
|
1.0
|
C2B
|
A:CLA607
|
4.2
|
30.8
|
1.0
|
C2D
|
A:CLA607
|
4.2
|
33.5
|
1.0
|
C2C
|
A:CLA607
|
4.3
|
29.7
|
1.0
|
O
|
D:HOH519
|
4.3
|
37.5
|
1.0
|
C3C
|
A:CLA607
|
4.3
|
29.1
|
1.0
|
C2A
|
A:CLA607
|
4.4
|
34.1
|
1.0
|
C3A
|
A:CLA607
|
4.4
|
31.2
|
1.0
|
CBA
|
A:CLA607
|
4.7
|
38.5
|
1.0
|
CG1
|
D:ILE178
|
4.8
|
30.7
|
1.0
|
CG2
|
D:ILE178
|
4.9
|
34.8
|
1.0
|
CBD
|
A:CLA607
|
4.9
|
34.5
|
1.0
|
|
Magnesium binding site 3 out
of 70 in 4pj0
Go back to
Magnesium Binding Sites List in 4pj0
Magnesium binding site 3 out
of 70 in the Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg608
b:19.6
occ:1.00
|
MG
|
A:CLA608
|
0.0
|
19.6
|
1.0
|
NB
|
A:CLA608
|
1.9
|
17.7
|
1.0
|
ND
|
A:CLA608
|
1.9
|
19.1
|
1.0
|
NC
|
A:CLA608
|
2.0
|
16.4
|
1.0
|
NA
|
A:CLA608
|
2.0
|
22.0
|
1.0
|
NE2
|
A:HIS118
|
2.0
|
29.6
|
1.0
|
CE1
|
A:HIS118
|
2.8
|
24.5
|
1.0
|
C4D
|
A:CLA608
|
2.9
|
20.1
|
1.0
|
C1C
|
A:CLA608
|
3.0
|
20.4
|
1.0
|
C4B
|
A:CLA608
|
3.0
|
19.8
|
1.0
|
C1A
|
A:CLA608
|
3.0
|
22.0
|
1.0
|
C1B
|
A:CLA608
|
3.0
|
24.3
|
1.0
|
C4A
|
A:CLA608
|
3.1
|
22.3
|
1.0
|
C1D
|
A:CLA608
|
3.1
|
18.7
|
1.0
|
CD2
|
A:HIS118
|
3.1
|
25.0
|
1.0
|
C4C
|
A:CLA608
|
3.2
|
18.7
|
1.0
|
CHC
|
A:CLA608
|
3.4
|
21.0
|
1.0
|
CHA
|
A:CLA608
|
3.4
|
20.6
|
1.0
|
CHB
|
A:CLA608
|
3.4
|
27.2
|
1.0
|
CHD
|
A:CLA608
|
3.6
|
14.1
|
1.0
|
ND1
|
A:HIS118
|
4.0
|
27.1
|
1.0
|
C3D
|
A:CLA608
|
4.1
|
16.2
|
1.0
|
CG
|
A:HIS118
|
4.2
|
24.3
|
1.0
|
C3B
|
A:CLA608
|
4.2
|
21.1
|
1.0
|
C2B
|
A:CLA608
|
4.2
|
23.3
|
1.0
|
C2D
|
A:CLA608
|
4.2
|
14.3
|
1.0
|
CG1
|
I:VAL8
|
4.2
|
24.7
|
1.0
|
C2C
|
A:CLA608
|
4.3
|
22.9
|
1.0
|
C3C
|
A:CLA608
|
4.4
|
22.6
|
1.0
|
C3A
|
A:CLA608
|
4.4
|
26.2
|
1.0
|
C2A
|
A:CLA608
|
4.4
|
24.9
|
1.0
|
CG2
|
I:VAL12
|
4.5
|
35.0
|
1.0
|
CBA
|
A:CLA608
|
4.9
|
35.8
|
1.0
|
CBD
|
A:CLA608
|
4.9
|
24.7
|
1.0
|
|
Magnesium binding site 4 out
of 70 in 4pj0
Go back to
Magnesium Binding Sites List in 4pj0
Magnesium binding site 4 out
of 70 in the Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:39.7
occ:1.00
|
MG
|
B:CLA601
|
0.0
|
39.7
|
1.0
|
NB
|
B:CLA601
|
1.9
|
41.3
|
1.0
|
ND
|
B:CLA601
|
1.9
|
46.0
|
1.0
|
NC
|
B:CLA601
|
2.0
|
46.9
|
1.0
|
NA
|
B:CLA601
|
2.0
|
47.6
|
1.0
|
C4D
|
B:CLA601
|
2.9
|
47.0
|
1.0
|
C1C
|
B:CLA601
|
3.0
|
39.9
|
1.0
|
C4B
|
B:CLA601
|
3.0
|
45.6
|
1.0
|
C1B
|
B:CLA601
|
3.0
|
49.7
|
1.0
|
C1A
|
B:CLA601
|
3.0
|
48.5
|
1.0
|
C4A
|
B:CLA601
|
3.1
|
48.5
|
1.0
|
C1D
|
B:CLA601
|
3.1
|
48.9
|
1.0
|
C4C
|
B:CLA601
|
3.1
|
44.4
|
1.0
|
CHC
|
B:CLA601
|
3.4
|
42.9
|
1.0
|
CHA
|
B:CLA601
|
3.4
|
46.7
|
1.0
|
CHB
|
B:CLA601
|
3.4
|
45.8
|
1.0
|
CHD
|
B:CLA601
|
3.6
|
44.5
|
1.0
|
C10
|
B:CLA601
|
3.6
|
49.3
|
1.0
|
C3D
|
B:CLA601
|
4.1
|
50.4
|
1.0
|
C3B
|
B:CLA601
|
4.2
|
41.5
|
1.0
|
C2B
|
B:CLA601
|
4.2
|
48.9
|
1.0
|
C2D
|
B:CLA601
|
4.2
|
48.9
|
1.0
|
O
|
B:TRP185
|
4.2
|
35.9
|
1.0
|
C2C
|
B:CLA601
|
4.3
|
42.4
|
1.0
|
C8
|
B:CLA601
|
4.3
|
50.2
|
1.0
|
C3C
|
B:CLA601
|
4.3
|
41.8
|
1.0
|
C3A
|
B:CLA601
|
4.4
|
49.5
|
1.0
|
C2A
|
B:CLA601
|
4.4
|
50.7
|
1.0
|
CE2
|
B:PHE190
|
4.5
|
33.1
|
1.0
|
C14
|
B:CLA601
|
4.6
|
53.3
|
1.0
|
C12
|
B:CLA601
|
4.7
|
48.5
|
1.0
|
CBB
|
B:CLA602
|
4.7
|
29.7
|
1.0
|
C11
|
B:CLA601
|
4.7
|
50.7
|
1.0
|
CZ
|
B:PHE190
|
4.9
|
36.3
|
1.0
|
CBD
|
B:CLA601
|
4.9
|
54.0
|
1.0
|
CBA
|
B:CLA601
|
5.0
|
55.0
|
1.0
|
|
Magnesium binding site 5 out
of 70 in 4pj0
Go back to
Magnesium Binding Sites List in 4pj0
Magnesium binding site 5 out
of 70 in the Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg602
b:30.1
occ:1.00
|
MG
|
B:CLA602
|
0.0
|
30.1
|
1.0
|
ND1
|
B:HIS201
|
1.9
|
28.1
|
1.0
|
NB
|
B:CLA602
|
1.9
|
32.7
|
1.0
|
ND
|
B:CLA602
|
1.9
|
32.4
|
1.0
|
NC
|
B:CLA602
|
2.0
|
25.0
|
1.0
|
NA
|
B:CLA602
|
2.0
|
30.8
|
1.0
|
CE1
|
B:HIS201
|
2.5
|
35.0
|
1.0
|
C4D
|
B:CLA602
|
2.9
|
32.9
|
1.0
|
C1C
|
B:CLA602
|
3.0
|
35.0
|
1.0
|
C4B
|
B:CLA602
|
3.0
|
26.8
|
1.0
|
C1A
|
B:CLA602
|
3.0
|
32.2
|
1.0
|
C1B
|
B:CLA602
|
3.0
|
32.9
|
1.0
|
C4A
|
B:CLA602
|
3.1
|
36.1
|
1.0
|
C1D
|
B:CLA602
|
3.1
|
29.0
|
1.0
|
C4C
|
B:CLA602
|
3.1
|
30.1
|
1.0
|
CG
|
B:HIS201
|
3.2
|
26.8
|
1.0
|
CHC
|
B:CLA602
|
3.4
|
29.9
|
1.0
|
CHA
|
B:CLA602
|
3.4
|
34.9
|
1.0
|
CHB
|
B:CLA602
|
3.4
|
34.8
|
1.0
|
CHD
|
B:CLA602
|
3.6
|
34.0
|
1.0
|
NE2
|
B:HIS201
|
3.8
|
29.7
|
1.0
|
CB
|
B:HIS201
|
3.9
|
30.7
|
1.0
|
CZ
|
H:PHE41
|
4.0
|
41.3
|
1.0
|
CD2
|
B:HIS201
|
4.1
|
21.4
|
1.0
|
C3D
|
B:CLA602
|
4.2
|
37.2
|
1.0
|
C3B
|
B:CLA602
|
4.2
|
31.4
|
1.0
|
C2B
|
B:CLA602
|
4.2
|
33.4
|
1.0
|
C2D
|
B:CLA602
|
4.2
|
33.9
|
1.0
|
C2C
|
B:CLA602
|
4.3
|
36.6
|
1.0
|
CE2
|
H:PHE41
|
4.3
|
44.8
|
1.0
|
C3C
|
B:CLA602
|
4.3
|
23.9
|
1.0
|
C2A
|
B:CLA602
|
4.3
|
36.9
|
1.0
|
C3A
|
B:CLA602
|
4.3
|
32.0
|
1.0
|
CA
|
B:HIS201
|
4.5
|
26.6
|
1.0
|
CBD
|
B:CLA602
|
4.9
|
34.5
|
1.0
|
|
Magnesium binding site 6 out
of 70 in 4pj0
Go back to
Magnesium Binding Sites List in 4pj0
Magnesium binding site 6 out
of 70 in the Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg603
b:26.3
occ:1.00
|
MG
|
B:CLA603
|
0.0
|
26.3
|
1.0
|
NB
|
B:CLA603
|
1.9
|
21.8
|
1.0
|
ND
|
B:CLA603
|
1.9
|
28.9
|
1.0
|
NE2
|
B:HIS202
|
1.9
|
33.0
|
1.0
|
NC
|
B:CLA603
|
2.0
|
25.4
|
1.0
|
NA
|
B:CLA603
|
2.0
|
29.4
|
1.0
|
CE1
|
B:HIS202
|
2.9
|
29.6
|
1.0
|
C4D
|
B:CLA603
|
2.9
|
29.9
|
1.0
|
C1C
|
B:CLA603
|
3.0
|
32.5
|
1.0
|
CD2
|
B:HIS202
|
3.0
|
30.5
|
1.0
|
C4B
|
B:CLA603
|
3.0
|
28.1
|
1.0
|
C1A
|
B:CLA603
|
3.0
|
31.8
|
1.0
|
C1B
|
B:CLA603
|
3.0
|
28.4
|
1.0
|
C4A
|
B:CLA603
|
3.1
|
30.3
|
1.0
|
C1D
|
B:CLA603
|
3.1
|
28.4
|
1.0
|
C4C
|
B:CLA603
|
3.1
|
22.3
|
1.0
|
CHC
|
B:CLA603
|
3.4
|
30.9
|
1.0
|
CHA
|
B:CLA603
|
3.4
|
31.5
|
1.0
|
CHB
|
B:CLA603
|
3.4
|
33.4
|
1.0
|
CHD
|
B:CLA603
|
3.6
|
25.7
|
1.0
|
ND1
|
B:HIS202
|
4.0
|
30.0
|
1.0
|
CG
|
B:HIS202
|
4.1
|
33.7
|
1.0
|
C3D
|
B:CLA603
|
4.1
|
27.8
|
1.0
|
C3B
|
B:CLA603
|
4.2
|
32.8
|
1.0
|
C2B
|
B:CLA603
|
4.2
|
28.0
|
1.0
|
C2D
|
B:CLA603
|
4.2
|
29.3
|
1.0
|
C2C
|
B:CLA603
|
4.3
|
28.9
|
1.0
|
C3C
|
B:CLA603
|
4.3
|
28.3
|
1.0
|
C3A
|
B:CLA603
|
4.4
|
30.9
|
1.0
|
C2A
|
B:CLA603
|
4.4
|
36.1
|
1.0
|
C6
|
B:CLA605
|
4.6
|
33.8
|
1.0
|
C9
|
B:CLA605
|
4.6
|
27.6
|
1.0
|
C5
|
B:CLA605
|
4.7
|
32.8
|
1.0
|
C7
|
B:CLA605
|
4.8
|
32.4
|
1.0
|
CBA
|
B:CLA603
|
4.8
|
29.6
|
1.0
|
C4
|
B:CLA605
|
4.8
|
33.7
|
1.0
|
CBD
|
B:CLA603
|
4.9
|
30.7
|
1.0
|
|
Magnesium binding site 7 out
of 70 in 4pj0
Go back to
Magnesium Binding Sites List in 4pj0
Magnesium binding site 7 out
of 70 in the Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg604
b:30.2
occ:1.00
|
MG
|
B:CLA604
|
0.0
|
30.2
|
1.0
|
ND
|
B:CLA604
|
1.9
|
27.5
|
1.0
|
NB
|
B:CLA604
|
1.9
|
25.2
|
1.0
|
NE2
|
B:HIS455
|
1.9
|
34.0
|
1.0
|
NC
|
B:CLA604
|
2.0
|
31.8
|
1.0
|
NA
|
B:CLA604
|
2.0
|
31.7
|
1.0
|
CE1
|
B:HIS455
|
2.9
|
28.0
|
1.0
|
C4D
|
B:CLA604
|
2.9
|
31.3
|
1.0
|
CD2
|
B:HIS455
|
2.9
|
32.4
|
1.0
|
C1C
|
B:CLA604
|
3.0
|
32.8
|
1.0
|
C4B
|
B:CLA604
|
3.0
|
32.0
|
1.0
|
C1B
|
B:CLA604
|
3.0
|
29.5
|
1.0
|
C1A
|
B:CLA604
|
3.1
|
29.2
|
1.0
|
C4A
|
B:CLA604
|
3.1
|
28.3
|
1.0
|
C1D
|
B:CLA604
|
3.1
|
31.0
|
1.0
|
C4C
|
B:CLA604
|
3.2
|
29.3
|
1.0
|
CHC
|
B:CLA604
|
3.4
|
32.9
|
1.0
|
CHB
|
B:CLA604
|
3.4
|
29.5
|
1.0
|
CHA
|
B:CLA604
|
3.4
|
30.3
|
1.0
|
CHD
|
B:CLA604
|
3.6
|
32.8
|
1.0
|
ND1
|
B:HIS455
|
4.0
|
22.7
|
1.0
|
CG
|
B:HIS455
|
4.1
|
21.7
|
1.0
|
C3D
|
B:CLA604
|
4.1
|
32.1
|
1.0
|
C3B
|
B:CLA604
|
4.2
|
28.7
|
1.0
|
C2B
|
B:CLA604
|
4.2
|
22.5
|
1.0
|
C2D
|
B:CLA604
|
4.2
|
29.6
|
1.0
|
C14
|
B:CLA612
|
4.2
|
40.1
|
1.0
|
C2C
|
B:CLA604
|
4.3
|
32.8
|
1.0
|
C3C
|
B:CLA604
|
4.4
|
30.5
|
1.0
|
C3A
|
B:CLA604
|
4.4
|
29.6
|
1.0
|
C2A
|
B:CLA604
|
4.4
|
32.0
|
1.0
|
C13
|
B:CLA612
|
4.6
|
38.9
|
1.0
|
C15
|
B:CLA612
|
4.7
|
40.4
|
1.0
|
CBD
|
B:CLA604
|
4.9
|
35.4
|
1.0
|
|
Magnesium binding site 8 out
of 70 in 4pj0
Go back to
Magnesium Binding Sites List in 4pj0
Magnesium binding site 8 out
of 70 in the Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg605
b:26.1
occ:1.00
|
MG
|
B:CLA605
|
0.0
|
26.1
|
1.0
|
ND
|
B:CLA605
|
1.9
|
35.2
|
1.0
|
NB
|
B:CLA605
|
1.9
|
29.0
|
1.0
|
NE2
|
B:HIS100
|
2.0
|
26.0
|
1.0
|
NC
|
B:CLA605
|
2.0
|
30.6
|
1.0
|
NA
|
B:CLA605
|
2.0
|
26.3
|
1.0
|
CE1
|
B:HIS100
|
2.8
|
29.3
|
1.0
|
C4D
|
B:CLA605
|
2.9
|
28.3
|
1.0
|
C1C
|
B:CLA605
|
3.0
|
33.0
|
1.0
|
C4B
|
B:CLA605
|
3.0
|
30.1
|
1.0
|
C1A
|
B:CLA605
|
3.0
|
29.5
|
1.0
|
C1B
|
B:CLA605
|
3.1
|
27.0
|
1.0
|
CD2
|
B:HIS100
|
3.1
|
28.5
|
1.0
|
C4A
|
B:CLA605
|
3.1
|
33.1
|
1.0
|
C1D
|
B:CLA605
|
3.1
|
28.8
|
1.0
|
C4C
|
B:CLA605
|
3.1
|
35.2
|
1.0
|
CHC
|
B:CLA605
|
3.4
|
30.4
|
1.0
|
CHA
|
B:CLA605
|
3.4
|
29.1
|
1.0
|
CHB
|
B:CLA605
|
3.5
|
24.4
|
1.0
|
CHD
|
B:CLA605
|
3.6
|
29.6
|
1.0
|
ND1
|
B:HIS100
|
4.0
|
22.4
|
1.0
|
CG
|
B:HIS100
|
4.1
|
25.3
|
1.0
|
C3D
|
B:CLA605
|
4.1
|
31.0
|
1.0
|
C3B
|
B:CLA605
|
4.2
|
35.1
|
1.0
|
C2B
|
B:CLA605
|
4.2
|
36.1
|
1.0
|
C2D
|
B:CLA605
|
4.2
|
31.7
|
1.0
|
C2C
|
B:CLA605
|
4.3
|
33.8
|
1.0
|
C2
|
B:CLA604
|
4.3
|
40.7
|
1.0
|
C3C
|
B:CLA605
|
4.3
|
33.6
|
1.0
|
C2A
|
B:CLA605
|
4.4
|
26.1
|
1.0
|
C3A
|
B:CLA605
|
4.4
|
26.9
|
1.0
|
C1
|
B:CLA604
|
4.4
|
37.5
|
1.0
|
CBA
|
B:CLA605
|
4.9
|
21.5
|
1.0
|
CBD
|
B:CLA605
|
4.9
|
25.8
|
1.0
|
C4
|
B:CLA606
|
4.9
|
33.4
|
1.0
|
O1A
|
B:CLA604
|
4.9
|
29.1
|
1.0
|
|
Magnesium binding site 9 out
of 70 in 4pj0
Go back to
Magnesium Binding Sites List in 4pj0
Magnesium binding site 9 out
of 70 in the Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg606
b:34.1
occ:1.00
|
MG
|
B:CLA606
|
0.0
|
34.1
|
1.0
|
ND
|
B:CLA606
|
1.9
|
33.7
|
1.0
|
NB
|
B:CLA606
|
1.9
|
35.1
|
1.0
|
ND1
|
B:HIS157
|
2.0
|
30.7
|
1.0
|
NC
|
B:CLA606
|
2.0
|
31.7
|
1.0
|
NA
|
B:CLA606
|
2.0
|
34.3
|
1.0
|
CE1
|
B:HIS157
|
2.3
|
33.5
|
1.0
|
C4D
|
B:CLA606
|
2.9
|
32.0
|
1.0
|
C1C
|
B:CLA606
|
3.0
|
34.6
|
1.0
|
C4B
|
B:CLA606
|
3.0
|
31.6
|
1.0
|
C1A
|
B:CLA606
|
3.0
|
34.3
|
1.0
|
C1B
|
B:CLA606
|
3.1
|
28.9
|
1.0
|
C4A
|
B:CLA606
|
3.1
|
30.0
|
1.0
|
C1D
|
B:CLA606
|
3.1
|
38.0
|
1.0
|
C4C
|
B:CLA606
|
3.1
|
35.6
|
1.0
|
CG
|
B:HIS157
|
3.3
|
29.9
|
1.0
|
CHC
|
B:CLA606
|
3.4
|
35.8
|
1.0
|
CHA
|
B:CLA606
|
3.4
|
31.3
|
1.0
|
CHB
|
B:CLA606
|
3.4
|
28.7
|
1.0
|
CHD
|
B:CLA606
|
3.6
|
34.8
|
1.0
|
NE2
|
B:HIS157
|
3.6
|
31.3
|
1.0
|
C8
|
B:UNL625
|
3.9
|
42.8
|
1.0
|
C9
|
B:UNL625
|
4.1
|
42.1
|
1.0
|
CD2
|
B:HIS157
|
4.1
|
26.7
|
1.0
|
CB
|
B:HIS157
|
4.1
|
29.9
|
1.0
|
C3D
|
B:CLA606
|
4.1
|
39.8
|
1.0
|
C7
|
B:UNL625
|
4.2
|
41.2
|
1.0
|
C3B
|
B:CLA606
|
4.2
|
27.9
|
1.0
|
C2B
|
B:CLA606
|
4.2
|
32.7
|
1.0
|
C2D
|
B:CLA606
|
4.2
|
38.4
|
1.0
|
C2C
|
B:CLA606
|
4.3
|
30.9
|
1.0
|
C3C
|
B:CLA606
|
4.3
|
38.4
|
1.0
|
C3A
|
B:CLA606
|
4.4
|
27.8
|
1.0
|
C2A
|
B:CLA606
|
4.4
|
31.0
|
1.0
|
C10
|
B:UNL625
|
4.9
|
42.1
|
1.0
|
CBD
|
B:CLA606
|
4.9
|
28.1
|
1.0
|
CD
|
B:PRO164
|
4.9
|
25.3
|
1.0
|
CBA
|
B:CLA606
|
5.0
|
32.5
|
1.0
|
|
Magnesium binding site 10 out
of 70 in 4pj0
Go back to
Magnesium Binding Sites List in 4pj0
Magnesium binding site 10 out
of 70 in the Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structure of T.Elongatus Photosystem II, Rows of Dimers Crystal Packing within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg607
b:25.7
occ:1.00
|
MG
|
B:CLA607
|
0.0
|
25.7
|
1.0
|
ND
|
B:CLA607
|
1.9
|
23.0
|
1.0
|
NB
|
B:CLA607
|
1.9
|
19.3
|
1.0
|
NC
|
B:CLA607
|
2.0
|
23.2
|
1.0
|
NA
|
B:CLA607
|
2.0
|
19.2
|
1.0
|
O
|
B:HOH738
|
2.1
|
20.9
|
1.0
|
C4D
|
B:CLA607
|
2.9
|
26.4
|
1.0
|
C1C
|
B:CLA607
|
3.0
|
22.1
|
1.0
|
C4B
|
B:CLA607
|
3.0
|
22.9
|
1.0
|
C1A
|
B:CLA607
|
3.0
|
24.7
|
1.0
|
C1B
|
B:CLA607
|
3.0
|
19.4
|
1.0
|
C4A
|
B:CLA607
|
3.1
|
23.8
|
1.0
|
C1D
|
B:CLA607
|
3.1
|
27.4
|
1.0
|
C4C
|
B:CLA607
|
3.1
|
24.4
|
1.0
|
CHC
|
B:CLA607
|
3.4
|
22.1
|
1.0
|
C12
|
B:LMG620
|
3.4
|
28.2
|
1.0
|
CHA
|
B:CLA607
|
3.4
|
27.8
|
1.0
|
CHB
|
B:CLA607
|
3.4
|
21.7
|
1.0
|
CHD
|
B:CLA607
|
3.6
|
25.1
|
1.0
|
C14
|
B:LMG620
|
4.0
|
27.2
|
1.0
|
C3D
|
B:CLA607
|
4.1
|
26.8
|
1.0
|
O
|
B:HOH739
|
4.2
|
26.4
|
1.0
|
C3B
|
B:CLA607
|
4.2
|
21.6
|
1.0
|
C2B
|
B:CLA607
|
4.2
|
23.1
|
1.0
|
C2D
|
B:CLA607
|
4.2
|
28.2
|
1.0
|
C2C
|
B:CLA607
|
4.3
|
19.1
|
1.0
|
C13
|
B:LMG620
|
4.3
|
35.0
|
1.0
|
C3C
|
B:CLA607
|
4.4
|
22.8
|
1.0
|
C3A
|
B:CLA607
|
4.4
|
26.0
|
1.0
|
C2A
|
B:CLA607
|
4.4
|
23.7
|
1.0
|
SD
|
B:MET37
|
4.5
|
27.6
|
1.0
|
C11
|
B:LMG620
|
4.5
|
40.4
|
1.0
|
O9
|
B:LMG620
|
4.7
|
46.9
|
1.0
|
CD2
|
B:PHE61
|
4.7
|
19.6
|
1.0
|
CBA
|
B:CLA607
|
4.7
|
27.4
|
1.0
|
CB
|
B:PHE61
|
4.8
|
23.9
|
1.0
|
CG
|
B:PHE61
|
4.9
|
22.4
|
1.0
|
CBD
|
B:CLA607
|
4.9
|
29.6
|
1.0
|
CE
|
B:MET37
|
4.9
|
30.5
|
1.0
|
|
Reference:
J.Hellmich,
M.Bommer,
A.Burkhardt,
M.Ibrahim,
J.Kern,
A.Meents,
F.Mueh,
H.Dobbek,
A.Zouni.
Native-Like Photosystem II Superstructure at 2.44 A Resolution Through Detergent Extraction From the Protein Crystal Structure 2014.
ISSN: ISSN 0969-2126
DOI: 10.1016/J.STR.2014.09.007
Page generated: Tue Aug 20 01:23:01 2024
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