Magnesium in PDB 4ppm: Crystal Structure of Pige: A Transaminase Involved in the Biosynthesis of 2-Methyl-3-N-Amyl-Pyrrole (Map) From Serratia Sp. FS14

The structure of Crystal Structure of Pige: A Transaminase Involved in the Biosynthesis of 2-Methyl-3-N-Amyl-Pyrrole (Map) From Serratia Sp. FS14, PDB code: 4ppm was solved by X.D.Lou, T.T.Ran, D.Q.Xu, W.W.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.89 / 2.30
Space group	P 3 2 1
Cell size a, b, c (Å), α, β, γ (°)	228.100, 228.100, 67.100, 90.00, 90.00, 120.00
R / Rfree (%)	23.8 / 27.2

The binding sites of Magnesium atom in the Crystal Structure of Pige: A Transaminase Involved in the Biosynthesis of 2-Methyl-3-N-Amyl-Pyrrole (Map) From Serratia Sp. FS14 (pdb code 4ppm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Pige: A Transaminase Involved in the Biosynthesis of 2-Methyl-3-N-Amyl-Pyrrole (Map) From Serratia Sp. FS14, PDB code: 4ppm:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Pige: A Transaminase Involved in the Biosynthesis of 2-Methyl-3-N-Amyl-Pyrrole (Map) From Serratia Sp. FS14


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pige: A Transaminase Involved in the Biosynthesis of 2-Methyl-3-N-Amyl-Pyrrole (Map) From Serratia Sp. FS14 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg901 b:30.0 occ:1.00 O A:ALA722 2.2 45.8 1.0 O A:VAL728 2.2 43.5 1.0 O A:TYR725 2.3 42.2 1.0 O A:HOH1120 3.1 47.6 1.0 C A:TYR725 3.3 51.9 1.0 C A:VAL728 3.3 45.5 1.0 C A:ALA722 3.3 51.0 1.0 CA A:ALA723 4.0 53.3 1.0 N A:TYR725 4.0 50.3 1.0 CA A:PRO726 4.1 57.5 1.0 N A:ALA723 4.1 57.2 1.0 N A:PRO726 4.2 55.9 1.0 CA A:VAL728 4.2 47.5 1.0 CA A:TYR725 4.2 51.1 1.0 CB A:VAL728 4.2 45.1 1.0 N A:SER729 4.3 45.0 1.0 N A:VAL728 4.3 53.4 1.0 C A:PRO726 4.4 55.0 1.0 CA A:ALA722 4.4 47.1 1.0 CA A:SER729 4.4 58.9 1.0 O A:PRO726 4.5 51.0 1.0 CB A:ALA722 4.6 48.4 1.0 O A:SER729 4.6 55.8 1.0 N A:ARG724 4.6 51.8 1.0 C A:SER729 4.6 59.5 1.0 C A:ALA723 4.7 52.4 1.0 CG1 A:VAL728 4.8 43.2 1.0 CB A:TYR725 4.9 49.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Pige: A Transaminase Involved in the Biosynthesis of 2-Methyl-3-N-Amyl-Pyrrole (Map) From Serratia Sp. FS14


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Pige: A Transaminase Involved in the Biosynthesis of 2-Methyl-3-N-Amyl-Pyrrole (Map) From Serratia Sp. FS14 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg901 b:30.0 occ:1.00 O B:TYR725 2.0 75.4 1.0 O B:ALA722 2.1 55.7 1.0 O B:VAL728 2.3 62.7 1.0 O B:HOH1153 3.2 54.3 1.0 C B:TYR725 3.2 66.7 1.0 C B:ALA722 3.3 66.3 1.0 C B:VAL728 3.5 66.0 1.0 CA B:PRO726 3.9 67.8 1.0 CA B:ALA723 3.9 60.1 1.0 N B:ALA723 4.0 62.2 1.0 N B:PRO726 4.1 66.9 1.0 N B:TYR725 4.2 61.5 1.0 O B:SER729 4.3 73.8 1.0 CA B:TYR725 4.3 60.4 1.0 CA B:SER729 4.3 63.0 1.0 N B:SER729 4.3 60.7 1.0 C B:ALA723 4.3 63.9 1.0 CB B:VAL728 4.3 66.8 1.0 CA B:VAL728 4.4 68.0 1.0 CA B:ALA722 4.4 55.9 1.0 C B:PRO726 4.5 67.9 1.0 CB B:ALA722 4.5 59.6 1.0 N B:VAL728 4.6 63.6 1.0 C B:SER729 4.6 64.0 1.0 O B:ALA723 4.7 76.5 1.0 O B:PRO726 4.8 60.7 1.0 N B:ARG724 4.8 68.0 1.0 CB B:TYR725 5.0 57.6 1.0

X.D.Lou, T.T.Ran, N.Han, Y.Gao, J.He, L.Tang, D.Q.Xu, W.W.Wang. Crystal Structure of the Catalytic Domain of Pige: A Transaminase Involved in the Biosynthesis of 2-Methyl-3-N-Amyl-Pyrrole (Map) From Serratia Sp. FS14 Biochem.Biophys.Res.Commun. V. 447 178 2014.
ISSN: ISSN 0006-291X
PubMed: 24704447
DOI: 10.1016/J.BBRC.2014.03.125