Magnesium in PDB 4pwx: Crystal Structure of An Atp-Bound GET3-GET4-GET5 Complex From S.Cerevisiae

The structure of Crystal Structure of An Atp-Bound GET3-GET4-GET5 Complex From S.Cerevisiae, PDB code: 4pwx was solved by H.B.Gristick, W.M.Clemons Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 5.40
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	166.341, 134.501, 84.060, 90.00, 113.37, 90.00
R / Rfree (%)	27 / 32.8

The structure of Crystal Structure of An Atp-Bound GET3-GET4-GET5 Complex From S.Cerevisiae also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Crystal Structure of An Atp-Bound GET3-GET4-GET5 Complex From S.Cerevisiae (pdb code 4pwx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of An Atp-Bound GET3-GET4-GET5 Complex From S.Cerevisiae, PDB code: 4pwx:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of An Atp-Bound GET3-GET4-GET5 Complex From S.Cerevisiae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Atp-Bound GET3-GET4-GET5 Complex From S.Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:0.3 occ:1.00 N A:THR32 2.4 0.2 1.0 OG1 A:THR32 2.5 0.6 1.0 O1B A:ATP401 2.6 0.2 1.0 O2B A:ATP401 2.6 0.5 1.0 CB A:THR32 2.8 1.0 1.0 OD1 A:ASP166 2.8 0.0 1.0 CA A:THR32 3.0 0.1 1.0 PB A:ATP401 3.1 0.2 1.0 C A:LYS31 3.2 1.0 1.0 PA A:ATP401 3.3 0.3 1.0 CB A:LYS31 3.5 0.5 1.0 CA A:LYS31 3.6 0.7 1.0 N A:LYS31 3.6 0.5 1.0 O1A A:ATP401 3.6 0.5 1.0 CG A:ASP166 3.8 0.3 1.0 O3A A:ATP401 3.8 0.4 1.0 O2A A:ATP401 3.8 0.2 1.0 OD2 A:ASP166 4.0 0.6 1.0 O A:LYS31 4.1 0.2 1.0 C A:GLY30 4.2 0.7 1.0 CG2 A:THR32 4.3 0.1 1.0 O1G A:ATP401 4.3 0.6 1.0 C A:THR32 4.4 0.4 1.0 O3G A:ATP401 4.4 0.8 1.0 O3B A:ATP401 4.5 0.1 1.0 PG A:ATP401 4.6 0.2 1.0 N A:THR33 4.6 0.1 1.0 CB A:ASN61 4.7 0.1 1.0 CG A:LYS31 4.7 0.6 1.0 O A:GLY30 4.7 0.7 1.0 ND2 A:ASN61 4.8 0.2 1.0 O5' A:ATP401 4.9 0.7 1.0 CA A:GLY30 4.9 0.4 1.0 O A:THR167 5.0 0.6 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of An Atp-Bound GET3-GET4-GET5 Complex From S.Cerevisiae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of An Atp-Bound GET3-GET4-GET5 Complex From S.Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:0.3 occ:1.00 OG1 B:THR32 2.5 0.5 1.0 O2B B:ATP401 2.5 0.3 1.0 O1B B:ATP401 2.5 0.5 1.0 OD1 B:ASP166 2.7 1.0 1.0 PB B:ATP401 3.0 0.4 1.0 O1G B:ATP401 3.0 1.0 1.0 O3G B:ATP401 3.0 0.8 1.0 N B:THR32 3.2 0.1 1.0 CB B:THR32 3.2 0.9 1.0 PG B:ATP401 3.4 0.7 1.0 CG B:ASP166 3.6 0.3 1.0 CA B:THR32 3.6 0.1 1.0 OD2 B:ASP166 3.6 0.5 1.0 C B:LYS31 3.8 0.9 1.0 O3B B:ATP401 3.9 0.0 1.0 CB B:LYS31 3.9 0.4 1.0 ND2 B:ASN61 4.1 0.2 1.0 CA B:LYS31 4.2 0.7 1.0 N B:LYS31 4.3 0.4 1.0 CB B:ASN61 4.3 0.1 1.0 O3A B:ATP401 4.4 0.7 1.0 PA B:ATP401 4.4 0.6 1.0 O B:THR167 4.5 0.5 1.0 CG2 B:THR32 4.6 0.1 1.0 O B:LYS31 4.6 0.2 1.0 CG B:ASN61 4.7 0.4 1.0 O2G B:ATP401 5.0 0.8 1.0 O1A B:ATP401 5.0 0.4 1.0 O2A B:ATP401 5.0 0.8 1.0 O B:ASP166 5.0 0.2 1.0 C B:GLY30 5.0 0.7 1.0 CB B:ASP166 5.0 0.5 1.0 CG B:LYS31 5.0 0.6 1.0

H.B.Gristick, M.Rao, J.W.Chartron, M.E.Rome, S.O.Shan, W.M.Clemons. Crystal Structure of Atp-Bound GET3-GET4-GET5 Complex Reveals Regulation of GET3 By GET4. Nat.Struct.Mol.Biol. V. 21 437 2014.
ISSN: ISSN 1545-9993
PubMed: 24727835
DOI: 10.1038/NSMB.2813