Atomistry » Magnesium » PDB 4pyk-4q86 » 4q2g
Atomistry »
  Magnesium »
    PDB 4pyk-4q86 »
      4q2g »

Magnesium in PDB 4q2g: Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant)

Enzymatic activity of Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant)

All present enzymatic activity of Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant):
2.7.7.41;

Protein crystallography data

The structure of Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant), PDB code: 4q2g was solved by X.Liu, Y.Yin, J.Wu, Z.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.10 / 3.40
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 141.410, 141.410, 197.760, 90.00, 90.00, 120.00
R / Rfree (%) 29.1 / 31.5

Other elements in 4q2g:

The structure of Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant) also contains other interesting chemical elements:

Mercury (Hg) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant) (pdb code 4q2g). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant), PDB code: 4q2g:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4q2g

Go back to Magnesium Binding Sites List in 4q2g
Magnesium binding site 1 out of 2 in the Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:0.5
occ:1.00
 OD1 A:ASP239 2.1 0.9 1.0
OD1 A:ASP269 2.2 0.5 1.0
OD2 A:ASP269 2.7 0.4 1.0
CG A:ASP269 2.7 0.2 1.0
CG A:ASP239 3.2 0.4 1.0
O A:ASP266 3.2 0.3 1.0
OD2 A:ASP239 3.8 0.1 1.0
CB A:ASP269 4.2 1.0 1.0
CB A:ASP239 4.2 0.8 1.0
N A:GLY270 4.2 91.2 1.0
C A:ASP266 4.4 0.1 1.0
OD1 A:ASP235 4.5 0.3 1.0
OD2 A:ASP164 4.5 1.0 1.0
N A:ASP269 4.8 97.6 1.0
CA A:ASP269 4.8 97.7 1.0
C A:ASP269 5.0 95.0 1.0

Magnesium binding site 2 out of 2 in 4q2g

Go back to Magnesium Binding Sites List in 4q2g
Magnesium binding site 2 out of 2 in the Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of An Intramembrane Cdp-Dag Synthetase Central For Phospholipid Biosynthesis (S200C/S223C, Inactive Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg303

b:0.6
occ:1.00
 OD1 B:ASP269 2.1 0.1 1.0
O B:ASP266 2.6 1.0 1.0
OD2 B:ASP269 2.6 0.6 1.0
OD1 B:ASP239 2.6 0.4 1.0
CG B:ASP269 2.7 1.0 1.0
CG B:ASP239 3.6 0.7 1.0
C B:ASP266 3.8 0.5 1.0
OD2 B:ASP239 4.0 0.4 1.0
CB B:ASP269 4.2 0.1 1.0
N B:GLY270 4.6 90.7 1.0
N B:ASP269 4.7 98.3 1.0
CA B:ASP266 4.7 0.7 1.0
CB B:ASP239 4.7 0.6 1.0
N B:ARG267 4.7 0.6 1.0
CA B:ARG267 4.8 0.9 1.0
C B:ARG267 4.8 0.7 1.0
OD2 B:ASP164 4.9 0.3 1.0
CA B:ASP269 4.9 98.0 1.0
N B:ILE268 5.0 1.0 1.0

Reference:

X.Liu, Y.Yin, J.Wu, Z.Liu. Structure and Mechanism of An Intramembrane Liponucleotide Synthetase Central For Phospholipid Biosynthesis Nat Commun V. 5 4244 2014.
ISSN: ESSN 2041-1723
PubMed: 24968740
DOI: 10.1038/NCOMMS5244
Page generated: Tue Aug 20 01:44:13 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy