Atomistry » Magnesium » PDB 4pyk-4q86 » 4q6x
Atomistry »
  Magnesium »
    PDB 4pyk-4q86 »
      4q6x »

Magnesium in PDB 4q6x: Structure of Phospholipase D BETA1B1I From Sicarius Terrosus Venom at 2.14 A Resolution

Enzymatic activity of Structure of Phospholipase D BETA1B1I From Sicarius Terrosus Venom at 2.14 A Resolution

All present enzymatic activity of Structure of Phospholipase D BETA1B1I From Sicarius Terrosus Venom at 2.14 A Resolution:
4.6.1.17;

Protein crystallography data

The structure of Structure of Phospholipase D BETA1B1I From Sicarius Terrosus Venom at 2.14 A Resolution, PDB code: 4q6x was solved by D.M.Lajoie, S.A.Roberts, P.A.Zobel-Thropp, G.J.Binford, M.H.Cordes, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.56 / 2.14
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 49.222, 49.222, 90.114, 90.00, 90.00, 120.00
R / Rfree (%) 16.4 / 22.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Phospholipase D BETA1B1I From Sicarius Terrosus Venom at 2.14 A Resolution (pdb code 4q6x). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Phospholipase D BETA1B1I From Sicarius Terrosus Venom at 2.14 A Resolution, PDB code: 4q6x:

Magnesium binding site 1 out of 1 in 4q6x

Go back to Magnesium Binding Sites List in 4q6x
Magnesium binding site 1 out of 1 in the Structure of Phospholipase D BETA1B1I From Sicarius Terrosus Venom at 2.14 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Phospholipase D BETA1B1I From Sicarius Terrosus Venom at 2.14 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:21.4
occ:1.00
OE2 A:GLU31 2.0 24.9 1.0
O A:HOH402 2.0 20.9 1.0
OD1 A:ASP33 2.1 27.3 1.0
O A:HOH515 2.1 21.4 1.0
OD2 A:ASP91 2.1 25.2 1.0
O A:HOH411 2.2 24.4 1.0
CG A:ASP91 3.1 24.1 1.0
CG A:ASP33 3.1 27.0 1.0
CD A:GLU31 3.1 23.6 1.0
CB A:ASP91 3.3 23.4 1.0
OD2 A:ASP33 3.5 26.4 1.0
OE1 A:GLU31 3.6 26.1 1.0
NZ A:LYS93 3.8 35.2 1.0
O A:HOH483 3.8 39.7 1.0
O A:HOH425 4.2 30.6 1.0
OD1 A:ASP91 4.2 27.6 1.0
CE A:LYS93 4.3 34.2 1.0
CG A:GLU31 4.3 23.3 1.0
CB A:ASP33 4.4 26.7 1.0
NE2 A:HIS11 4.6 31.8 1.0
CD2 A:HIS11 4.7 30.4 1.0
CA A:ASP33 4.7 26.6 1.0
O A:HOH441 4.7 36.4 1.0
CD2 A:HIS47 4.8 39.0 1.0
CA A:ASP91 4.8 23.8 1.0
N A:ASP33 4.9 24.7 1.0

Reference:

D.M.Lajoie, S.A.Roberts, P.A.Zobel-Thropp, J.L.Delahaye, V.Bandarian, G.J.Binford, M.H.Cordes. Variable Substrate Preference Among Phospholipase D Toxins From Sicariid Spiders J.Biol.Chem. 2015.
ISSN: ESSN 1083-351X
DOI: 10.1074/JBC.M115.636951
Page generated: Tue Aug 20 01:47:45 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy