Magnesium in PDB 4qbo: VRR_NUC Domain

The structure of VRR_NUC Domain, PDB code: 4qbo was solved by S.J.Smerdon, S.Pennell, J.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.99 / 1.30
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	44.854, 60.517, 81.137, 90.00, 90.00, 90.00
R / Rfree (%)	17.2 / 18

The binding sites of Magnesium atom in the VRR_NUC Domain (pdb code 4qbo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the VRR_NUC Domain, PDB code: 4qbo:

Magnesium binding site 1 out of 1 in the VRR_NUC Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of VRR_NUC Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:15.1 occ:1.00 O A:VAL46 2.3 11.6 1.0 OD2 A:ASP32 2.3 19.1 1.0 OE2 A:GLU45 2.3 17.2 1.0 O A:HOH217 2.4 19.3 1.0 OE2 A:GLU4 2.5 24.4 1.0 H1 A:HOH217 2.7 23.2 1.0 H2 A:HOH217 3.0 23.2 1.0 CG A:ASP32 3.2 17.1 1.0 CD A:GLU4 3.2 21.5 1.0 OD1 A:ASP32 3.2 21.3 1.0 O A:HOH219 3.3 21.4 1.0 H A:VAL46 3.3 12.3 1.0 CD A:GLU45 3.3 12.9 1.0 HD2 A:LYS47 3.3 20.1 1.0 C A:VAL46 3.4 10.9 1.0 OE1 A:GLU4 3.6 23.2 1.0 H2 A:HOH219 3.6 25.7 1.0 H1 A:HOH219 3.7 25.7 1.0 H1 A:HOH255 3.7 49.7 1.0 HE22 A:GLN57 3.8 18.2 1.0 HZ2 A:LYS47 3.8 19.7 1.0 HB A:VAL46 3.8 14.9 1.0 N A:VAL46 3.9 10.3 1.0 OE1 A:GLU45 3.9 13.9 1.0 O A:HOH354 4.0 47.0 1.0 HG3 A:GLU45 4.0 15.9 1.0 H2 A:HOH255 4.0 49.7 1.0 HA A:LYS47 4.0 16.0 1.0 CA A:VAL46 4.1 10.5 1.0 O A:HOH251 4.2 30.9 1.0 HG3 A:GLU4 4.2 20.2 1.0 CG A:GLU4 4.2 16.8 1.0 CD A:LYS47 4.3 16.8 1.0 O A:HOH255 4.3 41.4 1.0 H2 A:HOH251 4.3 37.1 1.0 CG A:GLU45 4.3 13.3 1.0 HG2 A:GLU4 4.4 20.2 1.0 CB A:VAL46 4.5 12.5 1.0 HD3 A:LYS47 4.5 20.1 1.0 N A:LYS47 4.5 11.7 1.0 NE2 A:GLN57 4.5 15.2 1.0 NZ A:LYS47 4.6 16.5 1.0 CB A:ASP32 4.6 14.8 1.0 H1 A:HOH251 4.7 37.1 1.0 HB2 A:ASP32 4.7 17.7 1.0 CA A:LYS47 4.8 13.3 1.0 HE21 A:GLN57 4.8 18.2 1.0 HZ3 A:LYS47 4.8 19.7 1.0 H2 A:HOH214 4.8 24.2 1.0 HA A:GLU45 4.8 11.5 1.0 HG2 A:GLU45 4.9 15.9 1.0 CE A:LYS47 4.9 21.9 1.0 C A:GLU45 4.9 10.2 1.0 HE3 A:LYS47 5.0 26.2 1.0

S.Pennell, A.C.Declais, J.Li, L.F.Haire, W.Berg, J.W.Saldanha, I.A.Taylor, J.Rouse, D.M.Lilley, S.J.Smerdon. FAN1 Activity on Asymmetric Repair Intermediates Is Mediated By An Atypical Monomeric Virus-Type Replication-Repair Nuclease Domain. Cell Rep V. 8 84 2014.
ISSN: ESSN 2211-1247
PubMed: 24981866
DOI: 10.1016/J.CELREP.2014.06.001