Magnesium in PDB 4qdi: Crystal Structure II of Murf From Acinetobacter Baumannii

All present enzymatic activity of Crystal Structure II of Murf From Acinetobacter Baumannii:
6.3.2.10;

The structure of Crystal Structure II of Murf From Acinetobacter Baumannii, PDB code: 4qdi was solved by Y.J.An, C.S.Jeong, S.S.Cha, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.48 / 1.80
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	85.783, 85.783, 130.203, 90.00, 90.00, 120.00
R / Rfree (%)	22.7 / 25.3

The binding sites of Magnesium atom in the Crystal Structure II of Murf From Acinetobacter Baumannii (pdb code 4qdi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure II of Murf From Acinetobacter Baumannii, PDB code: 4qdi:

Magnesium binding site 1 out of 1 in the Crystal Structure II of Murf From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure II of Murf From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg503 b:51.8 occ:1.00 OE2 A:GLU172 2.5 27.7 1.0 OG1 A:THR126 2.5 28.0 1.0 O2G A:ATP501 2.6 36.3 1.0 O A:HOH794 2.6 80.0 1.0 O1B A:ATP501 2.8 30.7 1.0 CD A:GLU172 3.3 24.4 1.0 OE1 A:GLU172 3.4 24.7 1.0 CB A:THR126 3.8 24.7 1.0 PG A:ATP501 3.8 36.9 1.0 O A:HOH735 4.0 39.8 1.0 PB A:ATP501 4.0 30.4 1.0 ND2 A:ASN150 4.0 23.2 1.0 O3B A:ATP501 4.0 32.7 1.0 O A:HOH840 4.0 42.1 1.0 O A:HOH716 4.2 43.0 1.0 OH A:TYR343 4.2 34.6 1.0 NH2 A:ARG327 4.2 35.1 1.0 N A:THR126 4.3 21.9 1.0 O A:GLY147 4.4 29.6 1.0 O1G A:ATP501 4.4 33.9 1.0 CA A:THR126 4.5 22.5 1.0 CE A:LYS125 4.5 23.8 1.0 O2A A:ATP501 4.6 30.9 1.0 CG A:GLU172 4.7 20.8 1.0 CB A:LYS125 4.7 21.3 1.0 CG2 A:THR126 4.8 23.7 1.0 CZ A:TYR343 4.9 35.1 1.0 O2B A:ATP501 5.0 29.6 1.0

S.S.Cha, Y.J.An, C.S.Jeong, J.H.Yu, K.M.Chung. Atp-Binding Mode Including A Carbamoylated Lysine and Two Mg(2+) Ions, and Substrate-Binding Mode in Acinetobacter Baumannii Murf Biochem.Biophys.Res.Commun. V. 450 1045 2014.
ISSN: ISSN 0006-291X
PubMed: 24978312
DOI: 10.1016/J.BBRC.2014.06.108