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Magnesium in PDB 4qfm: The Structure of AIF2GAMMA Subunit D152A From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp

Protein crystallography data

The structure of The Structure of AIF2GAMMA Subunit D152A From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp, PDB code: 4qfm was solved by O.V.Kravchenko, O.S.Nikonov, V.I.Arhipova, E.A.Stolboushkina, A.G.Gabdulkhakov, A.D.Nikulin, M.B.Garber, S.V.Nikonov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.69 / 2.30
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 186.740, 186.740, 186.740, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 19.6

Other elements in 4qfm:

The structure of The Structure of AIF2GAMMA Subunit D152A From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp also contains other interesting chemical elements:

Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Structure of AIF2GAMMA Subunit D152A From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp (pdb code 4qfm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Structure of AIF2GAMMA Subunit D152A From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp, PDB code: 4qfm:

Magnesium binding site 1 out of 1 in 4qfm

Go back to Magnesium Binding Sites List in 4qfm
Magnesium binding site 1 out of 1 in the The Structure of AIF2GAMMA Subunit D152A From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of AIF2GAMMA Subunit D152A From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:9.1
occ:1.00
O3G A:GCP501 2.0 25.5 1.0
O2B A:GCP501 2.1 22.7 1.0
O A:HOH940 2.1 19.8 1.0
OG1 A:THR46 2.1 30.8 1.0
O A:HOH810 2.1 26.5 1.0
OG1 A:THR23 2.2 24.6 1.0
CB A:THR46 3.1 26.9 1.0
PB A:GCP501 3.3 25.2 1.0
PG A:GCP501 3.3 28.8 1.0
CB A:THR23 3.3 29.6 1.0
C3B A:GCP501 3.6 27.8 1.0
N A:THR23 3.9 21.4 1.0
N A:THR46 4.0 30.2 1.0
CA A:THR46 4.1 32.9 1.0
OD2 A:ASP93 4.1 30.6 1.0
CG2 A:THR46 4.1 23.9 1.0
O1B A:GCP501 4.1 25.2 1.0
O2 A:FMT521 4.2 34.8 1.0
CA A:THR23 4.2 23.8 1.0
O2A A:GCP501 4.2 25.4 1.0
O2G A:GCP501 4.3 24.3 1.0
O1G A:GCP501 4.3 27.2 1.0
OD1 A:ASP93 4.4 30.5 1.0
O A:HOH619 4.4 25.2 1.0
CG2 A:THR23 4.4 18.9 1.0
CE A:LYS22 4.4 25.1 1.0
O3A A:GCP501 4.5 32.1 1.0
O A:ALA94 4.5 25.9 1.0
CG A:ASP93 4.6 29.5 1.0
CB A:LYS22 4.6 23.4 1.0
PA A:GCP501 4.7 24.7 1.0
C A:LYS22 4.9 28.3 1.0
O1A A:GCP501 5.0 27.3 1.0

Reference:

O.V.Kravchenko, O.S.Nikonov, V.I.Arhipova, E.A.Stolboushkina, A.G.Gabdulkhakov, A.D.Nikulin, M.B.Garber, S.V.Nikonov. The Structure of AIF2GAMMA Subunit D152A From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp To Be Published.
Page generated: Mon Dec 14 19:22:34 2020

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