Magnesium in PDB 4qhz: Crystal Structure of A Putative Glycosyl Hydrolase (BDI_3914) From Parabacteroides Distasonis Atcc 8503 at 2.13 A Resolution

The structure of Crystal Structure of A Putative Glycosyl Hydrolase (BDI_3914) From Parabacteroides Distasonis Atcc 8503 at 2.13 A Resolution, PDB code: 4qhz was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.25 / 2.13
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	47.774, 144.763, 82.452, 90.00, 101.27, 90.00
R / Rfree (%)	17.1 / 20.3

The binding sites of Magnesium atom in the Crystal Structure of A Putative Glycosyl Hydrolase (BDI_3914) From Parabacteroides Distasonis Atcc 8503 at 2.13 A Resolution (pdb code 4qhz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of A Putative Glycosyl Hydrolase (BDI_3914) From Parabacteroides Distasonis Atcc 8503 at 2.13 A Resolution, PDB code: 4qhz:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Crystal Structure of A Putative Glycosyl Hydrolase (BDI_3914) From Parabacteroides Distasonis Atcc 8503 at 2.13 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Putative Glycosyl Hydrolase (BDI_3914) From Parabacteroides Distasonis Atcc 8503 at 2.13 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:17.7 occ:1.00 O A:HOH401 2.0 17.3 1.0 O A:SER138 2.1 20.7 1.0 OE2 A:GLU147 2.1 19.5 1.0 OE1 A:GLN246 2.1 21.1 1.0 OD1 A:ASN137 2.2 18.4 1.0 OE1 A:GLN149 2.2 21.2 1.0 C A:SER138 3.1 19.9 1.0 CD A:GLN246 3.1 22.5 1.0 CD A:GLU147 3.2 21.3 1.0 CD A:GLN149 3.3 20.8 1.0 CG A:ASN137 3.3 19.7 1.0 NE2 A:GLN246 3.6 23.6 1.0 OE1 A:GLU147 3.7 23.0 1.0 NE2 A:GLN149 3.7 21.9 1.0 ND2 A:ASN137 3.9 21.8 1.0 N A:SER138 3.9 22.3 1.0 CA A:SER138 3.9 21.7 1.0 N A:GLY139 4.0 18.9 1.0 O A:VAL150 4.1 21.6 1.0 CA A:GLY139 4.1 21.6 1.0 O A:HOH459 4.2 23.7 1.0 CG A:GLU147 4.4 22.2 1.0 N A:VAL150 4.4 20.7 1.0 C A:ASN137 4.4 21.8 1.0 CG A:GLN246 4.4 22.3 1.0 CG A:GLN149 4.6 21.3 1.0 CB A:ASN137 4.6 20.2 1.0 CA A:GLN149 4.7 19.4 1.0 CB A:GLN246 4.7 22.4 1.0 CA A:ASN137 4.8 20.3 1.0 CD2 A:HIS248 4.8 28.2 1.0

Magnesium binding site 2 out of 4 in the Crystal Structure of A Putative Glycosyl Hydrolase (BDI_3914) From Parabacteroides Distasonis Atcc 8503 at 2.13 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Putative Glycosyl Hydrolase (BDI_3914) From Parabacteroides Distasonis Atcc 8503 at 2.13 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:19.9 occ:1.00 O B:HOH401 2.0 20.2 1.0 OD1 B:ASN137 2.0 22.9 1.0 O B:SER138 2.1 20.8 1.0 OE1 B:GLN149 2.1 20.8 1.0 OE1 B:GLN246 2.2 23.4 1.0 OE2 B:GLU147 2.2 21.2 1.0 C B:SER138 3.1 21.9 1.0 CD B:GLN149 3.2 21.6 1.0 CG B:ASN137 3.2 22.8 1.0 CD B:GLN246 3.2 22.9 1.0 CD B:GLU147 3.3 20.6 1.0 NE2 B:GLN149 3.6 20.8 1.0 NE2 B:GLN246 3.7 22.5 1.0 ND2 B:ASN137 3.7 22.8 1.0 OE1 B:GLU147 3.8 21.9 1.0 N B:SER138 3.9 23.7 1.0 CA B:SER138 3.9 22.5 1.0 O B:VAL150 4.0 20.1 1.0 N B:GLY139 4.0 21.9 1.0 CA B:GLY139 4.2 21.1 1.0 O B:HOH501 4.2 21.0 1.0 N B:VAL150 4.4 17.3 1.0 C B:ASN137 4.4 22.4 1.0 CB B:ASN137 4.5 21.8 1.0 CG B:GLN149 4.5 20.2 1.0 CG B:GLU147 4.5 20.1 1.0 CG B:GLN246 4.6 22.2 1.0 CA B:ASN137 4.7 22.4 1.0 CA B:GLN149 4.7 17.3 1.0 CD2 B:HIS248 4.8 32.5 1.0 CB B:GLN246 4.8 22.1 1.0 C B:VAL150 4.9 18.8 1.0 CB B:GLN149 4.9 18.3 1.0

Magnesium binding site 3 out of 4 in the Crystal Structure of A Putative Glycosyl Hydrolase (BDI_3914) From Parabacteroides Distasonis Atcc 8503 at 2.13 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of A Putative Glycosyl Hydrolase (BDI_3914) From Parabacteroides Distasonis Atcc 8503 at 2.13 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg302 b:15.7 occ:1.00 O C:HOH401 2.0 21.3 1.0 OD1 C:ASN137 2.1 23.0 1.0 OE1 C:GLN149 2.1 23.6 1.0 OE1 C:GLN246 2.1 21.1 1.0 O C:SER138 2.2 22.9 1.0 OE2 C:GLU147 2.2 23.4 1.0 CD C:GLN246 3.2 23.9 1.0 CG C:ASN137 3.2 22.7 1.0 CD C:GLN149 3.2 25.4 1.0 C C:SER138 3.2 22.0 1.0 CD C:GLU147 3.3 25.3 1.0 NE2 C:GLN246 3.6 26.7 1.0 NE2 C:GLN149 3.6 24.1 1.0 ND2 C:ASN137 3.7 23.2 1.0 OE1 C:GLU147 3.7 23.9 1.0 N C:SER138 4.0 22.5 1.0 CA C:SER138 4.0 21.2 1.0 O C:VAL150 4.1 23.0 1.0 N C:GLY139 4.1 23.3 1.0 CA C:GLY139 4.3 23.3 1.0 O C:HOH489 4.3 31.6 1.0 O C:HOH422 4.4 18.7 1.0 C C:ASN137 4.5 22.0 1.0 CB C:ASN137 4.5 22.1 1.0 CG C:GLN246 4.5 24.0 1.0 N C:VAL150 4.5 20.6 1.0 CG C:GLN149 4.5 22.9 1.0 CG C:GLU147 4.6 23.5 1.0 CD2 C:HIS248 4.7 27.5 1.0 CA C:ASN137 4.8 20.3 1.0 CA C:GLN149 4.8 21.5 1.0 CB C:GLN246 4.8 24.0 1.0

Magnesium binding site 4 out of 4 in the Crystal Structure of A Putative Glycosyl Hydrolase (BDI_3914) From Parabacteroides Distasonis Atcc 8503 at 2.13 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of A Putative Glycosyl Hydrolase (BDI_3914) From Parabacteroides Distasonis Atcc 8503 at 2.13 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg302 b:20.8 occ:1.00 O D:HOH401 2.0 27.5 1.0 OE1 D:GLN246 2.1 26.1 1.0 OE2 D:GLU147 2.1 27.9 1.0 OD1 D:ASN137 2.2 23.8 1.0 OE1 D:GLN149 2.2 25.1 1.0 O D:SER138 2.3 28.2 1.0 CD D:GLN246 3.1 27.4 1.0 CD D:GLN149 3.2 25.4 1.0 CD D:GLU147 3.2 25.4 1.0 CG D:ASN137 3.3 26.6 1.0 C D:SER138 3.3 27.4 1.0 NE2 D:GLN246 3.5 28.0 1.0 NE2 D:GLN149 3.6 26.3 1.0 OE1 D:GLU147 3.7 25.2 1.0 ND2 D:ASN137 3.8 26.7 1.0 N D:SER138 4.1 26.1 1.0 CA D:SER138 4.1 26.4 1.0 O D:HOH447 4.1 18.1 1.0 N D:GLY139 4.2 26.5 1.0 O D:VAL150 4.2 25.4 1.0 CA D:GLY139 4.3 25.5 1.0 CG D:GLN246 4.5 28.0 1.0 CG D:GLU147 4.5 24.3 1.0 CG D:GLN149 4.6 24.4 1.0 C D:ASN137 4.6 27.2 1.0 N D:VAL150 4.6 22.8 1.0 CB D:ASN137 4.6 27.1 1.0 CD2 D:HIS248 4.7 31.8 1.0 CA D:GLN149 4.8 22.2 1.0 CB D:GLN246 4.8 28.4 1.0 CA D:ASN137 4.9 27.0 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.