Atomistry » Magnesium » PDB 4qh0-4qpm » 4qji
Atomistry »
  Magnesium »
    PDB 4qh0-4qpm »
      4qji »

Magnesium in PDB 4qji: Crystal Structure of the C-Terminal Ctp-Binding Domain of A Phosphopantothenoylcysteine Decarboxylase/Phosphopantothenate- Cysteine Ligase with Bound Ctp From Mycobacterium Smegmatis

Enzymatic activity of Crystal Structure of the C-Terminal Ctp-Binding Domain of A Phosphopantothenoylcysteine Decarboxylase/Phosphopantothenate- Cysteine Ligase with Bound Ctp From Mycobacterium Smegmatis

All present enzymatic activity of Crystal Structure of the C-Terminal Ctp-Binding Domain of A Phosphopantothenoylcysteine Decarboxylase/Phosphopantothenate- Cysteine Ligase with Bound Ctp From Mycobacterium Smegmatis:
4.1.1.36;

Protein crystallography data

The structure of Crystal Structure of the C-Terminal Ctp-Binding Domain of A Phosphopantothenoylcysteine Decarboxylase/Phosphopantothenate- Cysteine Ligase with Bound Ctp From Mycobacterium Smegmatis, PDB code: 4qji was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.11 / 2.65
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 90.580, 90.580, 109.570, 90.00, 90.00, 120.00
R / Rfree (%) 19.2 / 24.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the C-Terminal Ctp-Binding Domain of A Phosphopantothenoylcysteine Decarboxylase/Phosphopantothenate- Cysteine Ligase with Bound Ctp From Mycobacterium Smegmatis (pdb code 4qji). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the C-Terminal Ctp-Binding Domain of A Phosphopantothenoylcysteine Decarboxylase/Phosphopantothenate- Cysteine Ligase with Bound Ctp From Mycobacterium Smegmatis, PDB code: 4qji:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4qji

Go back to Magnesium Binding Sites List in 4qji
Magnesium binding site 1 out of 2 in the Crystal Structure of the C-Terminal Ctp-Binding Domain of A Phosphopantothenoylcysteine Decarboxylase/Phosphopantothenate- Cysteine Ligase with Bound Ctp From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the C-Terminal Ctp-Binding Domain of A Phosphopantothenoylcysteine Decarboxylase/Phosphopantothenate- Cysteine Ligase with Bound Ctp From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:27.0
occ:1.00
O2B A:CTP500 2.3 48.5 1.0
OD2 A:ASP281 2.3 69.9 1.0
OD1 A:ASP281 2.4 63.4 1.0
O1A A:CTP500 2.4 46.0 1.0
O1G A:CTP500 2.4 68.2 1.0
CG A:ASP281 2.7 65.7 1.0
O A:HOH602 2.9 47.3 1.0
PB A:CTP500 3.6 52.3 1.0
PG A:CTP500 3.6 71.7 1.0
PA A:CTP500 3.7 52.2 1.0
O2G A:CTP500 4.0 74.0 1.0
O3B A:CTP500 4.0 69.0 1.0
O3A A:CTP500 4.1 65.5 1.0
CB A:ASP281 4.2 63.2 1.0
O A:VAL279 4.4 54.9 1.0
O2A A:CTP500 4.5 53.3 1.0
C5 A:CTP500 4.6 48.4 1.0
O A:HOH606 4.7 40.7 1.0
O1B A:CTP500 4.8 54.5 1.0
O3G A:CTP500 4.9 72.7 1.0
O5' A:CTP500 4.9 47.0 1.0
C6 A:CTP500 4.9 47.6 1.0
CA A:ASP281 5.0 56.9 1.0

Magnesium binding site 2 out of 2 in 4qji

Go back to Magnesium Binding Sites List in 4qji
Magnesium binding site 2 out of 2 in the Crystal Structure of the C-Terminal Ctp-Binding Domain of A Phosphopantothenoylcysteine Decarboxylase/Phosphopantothenate- Cysteine Ligase with Bound Ctp From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the C-Terminal Ctp-Binding Domain of A Phosphopantothenoylcysteine Decarboxylase/Phosphopantothenate- Cysteine Ligase with Bound Ctp From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:39.3
occ:1.00
O1A B:CTP500 2.3 55.8 1.0
O B:HOH602 2.4 41.5 1.0
O1G B:CTP500 2.5 63.2 1.0
O2B B:CTP500 2.5 50.7 1.0
OD2 B:ASP281 2.7 63.0 1.0
OD1 B:ASP281 2.8 54.1 1.0
CG B:ASP281 3.1 57.3 1.0
PG B:CTP500 3.7 60.2 1.0
PA B:CTP500 3.7 55.8 1.0
PB B:CTP500 3.7 50.0 1.0
O2G B:CTP500 4.1 58.8 1.0
O3B B:CTP500 4.2 93.3 1.0
O3A B:CTP500 4.2 0.5 1.0
O2A B:CTP500 4.5 59.2 1.0
O B:VAL279 4.6 50.6 1.0
CB B:ASP281 4.6 51.2 1.0
O5' B:CTP500 4.8 57.2 1.0
C5 B:CTP500 4.8 53.0 1.0
O B:HOH610 4.9 51.3 1.0
O3G B:CTP500 4.9 66.0 1.0
O1B B:CTP500 5.0 56.6 1.0

Reference:

D.M.Dranow, J.Abendroth, A.K.Wernimont, T.E.Edwards, D.Lorimer. Crystal Structure of the C-Terminal Ctp-Binding Domain of A Phosphopantothenoylcysteine Decarboxylase/Phosphopantothenate-Cysteine Ligase with Bound Ctp From Mycobacterium Smegmatis To Be Published.
Page generated: Tue Aug 20 02:01:27 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy