Atomistry » Magnesium » PDB 4r0d-4rcr » 4r7g
Atomistry »
  Magnesium »
    PDB 4r0d-4rcr »
      4r7g »

Magnesium in PDB 4r7g: Determination of the Formylglycinamide Ribonucleotide Amidotransferase Ammonia Pathway By Combining 3D-Rism Theory with Experiment

Enzymatic activity of Determination of the Formylglycinamide Ribonucleotide Amidotransferase Ammonia Pathway By Combining 3D-Rism Theory with Experiment

All present enzymatic activity of Determination of the Formylglycinamide Ribonucleotide Amidotransferase Ammonia Pathway By Combining 3D-Rism Theory with Experiment:
6.3.5.3;

Protein crystallography data

The structure of Determination of the Formylglycinamide Ribonucleotide Amidotransferase Ammonia Pathway By Combining 3D-Rism Theory with Experiment, PDB code: 4r7g was solved by A.S.Tanwar, D.J.Sindhikara, F.Hirata, R.Anand, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.90
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 146.570, 146.570, 141.320, 90.00, 90.00, 120.00
R / Rfree (%) 17.9 / 23.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Determination of the Formylglycinamide Ribonucleotide Amidotransferase Ammonia Pathway By Combining 3D-Rism Theory with Experiment (pdb code 4r7g). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Determination of the Formylglycinamide Ribonucleotide Amidotransferase Ammonia Pathway By Combining 3D-Rism Theory with Experiment, PDB code: 4r7g:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 4r7g

Go back to Magnesium Binding Sites List in 4r7g
Magnesium binding site 1 out of 3 in the Determination of the Formylglycinamide Ribonucleotide Amidotransferase Ammonia Pathway By Combining 3D-Rism Theory with Experiment


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Determination of the Formylglycinamide Ribonucleotide Amidotransferase Ammonia Pathway By Combining 3D-Rism Theory with Experiment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1301

b:18.5
occ:1.00
 O3B A:ADP1310 2.2 1.5 0.5
OD1 A:ASP679 2.3 30.3 1.0
OD1 A:ASP884 2.4 15.5 1.0
OD1 A:ASN722 2.5 13.4 1.0
O1B A:ADP1310 3.1 1.5 0.5
PB A:ADP1310 3.1 1.5 0.5
CG A:ASP884 3.2 13.4 1.0
CG A:ASN722 3.4 15.7 1.0
OD2 A:ASP884 3.4 13.2 1.0
CG A:ASP679 3.4 30.0 1.0
ND2 A:ASN722 3.6 13.8 1.0
OG A:SER886 3.7 24.8 1.0
O2B A:ADP1310 3.8 1.5 0.5
O A:ASP884 4.0 23.9 1.0
OD2 A:ASP679 4.1 30.2 1.0
O A:HOH1535 4.2 20.9 1.0
CB A:SER886 4.3 22.8 1.0
CB A:ASP679 4.4 28.3 1.0
O3A A:ADP1310 4.4 1.5 0.5
NE2 A:HIS883 4.5 4.3 1.0
CB A:ASP884 4.6 12.2 1.0
CD2 A:HIS883 4.6 4.7 1.0
C A:ASP884 4.6 23.9 1.0
OE2 A:GLU718 4.6 28.5 1.0
N A:ASP884 4.7 21.0 1.0
CA A:ASP679 4.8 23.7 1.0
CA A:ASP884 4.8 22.6 1.0
CB A:ASN722 4.8 17.2 1.0
MG A:MG1303 4.9 18.8 1.0

Magnesium binding site 2 out of 3 in 4r7g

Go back to Magnesium Binding Sites List in 4r7g
Magnesium binding site 2 out of 3 in the Determination of the Formylglycinamide Ribonucleotide Amidotransferase Ammonia Pathway By Combining 3D-Rism Theory with Experiment


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Determination of the Formylglycinamide Ribonucleotide Amidotransferase Ammonia Pathway By Combining 3D-Rism Theory with Experiment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1302

b:28.9
occ:1.00
 O2B A:ADP1310 2.3 1.5 0.5
O A:HOH1615 2.3 60.0 1.0
OE2 A:GLU718 2.6 28.5 1.0
CD A:GLU718 3.5 26.1 1.0
O A:ILE697 3.7 12.2 1.0
PB A:ADP1310 3.7 1.5 0.5
O A:HOH1609 3.8 31.9 1.0
OE1 A:GLU718 3.8 27.5 1.0
ND2 A:ASN722 4.0 13.8 1.0
O1A A:ADP1310 4.1 1.5 0.5
O3B A:ADP1310 4.3 1.5 0.5
CB A:TYR388 4.4 5.5 1.0
O3A A:ADP1310 4.4 1.5 0.5
C A:ILE697 4.5 11.4 1.0
CG A:GLU718 4.7 26.2 1.0
OE1 A:GLU699 4.7 24.3 1.0
O1B A:ADP1310 4.7 1.5 0.5
O A:GLU699 4.8 17.3 1.0
N A:GLU699 4.8 14.3 1.0
PA A:ADP1310 4.9 1.5 0.5
CG2 A:ILE697 4.9 1.0 1.0

Magnesium binding site 3 out of 3 in 4r7g

Go back to Magnesium Binding Sites List in 4r7g
Magnesium binding site 3 out of 3 in the Determination of the Formylglycinamide Ribonucleotide Amidotransferase Ammonia Pathway By Combining 3D-Rism Theory with Experiment


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Determination of the Formylglycinamide Ribonucleotide Amidotransferase Ammonia Pathway By Combining 3D-Rism Theory with Experiment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1303

b:18.8
occ:1.00
 O1B A:ADP1310 2.2 1.5 0.5
O A:HOH1444 2.4 26.7 1.0
O2A A:ADP1310 2.7 1.5 0.5
PB A:ADP1310 3.5 1.5 0.5
OE1 A:GLU896 3.6 11.2 1.0
OG A:SER886 3.7 24.8 1.0
PA A:ADP1310 3.8 1.5 0.5
O3A A:ADP1310 3.8 1.5 0.5
OE2 A:GLU896 3.9 10.8 1.0
O A:ASP887 4.1 21.8 1.0
CD A:GLU896 4.2 10.6 1.0
O2B A:ADP1310 4.3 1.5 0.5
O A:HOH1535 4.4 20.9 1.0
O1A A:ADP1310 4.5 1.5 0.5
O A:VAL646 4.6 8.4 1.0
CG1 A:VAL892 4.6 6.6 1.0
O3B A:ADP1310 4.6 1.5 0.5
CB A:ASP887 4.9 26.4 1.0
O A:THR645 4.9 15.2 1.0
MG A:MG1301 4.9 18.5 1.0
O A:HOH1557 4.9 38.9 1.0
O A:HOH1615 4.9 60.0 1.0
O5' A:ADP1310 4.9 1.5 0.5

Reference:

A.S.Tanwar, D.J.Sindhikara, F.Hirata, R.Anand. Determination of the Formylglycinamide Ribonucleotide Amidotransferase Ammonia Pathway By Combining 3D-Rism Theory with Experiment Acs Chem.Biol. 2014.
ISSN: ESSN 1554-8937
PubMed: 25551173
DOI: 10.1021/CB501015R
Page generated: Tue Aug 20 02:53:18 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy