Magnesium in PDB 4r7t: Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae

All present enzymatic activity of Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae:
3.5.99.6;

The structure of Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae, PDB code: 4r7t was solved by N.Maltseva, Y.Kim, K.Kwon, W.F.Anderson, A.Joachimiak, Csgid, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.65 / 2.10
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	78.359, 135.124, 86.001, 90.00, 106.15, 90.00
R / Rfree (%)	19.9 / 25.4

The structure of Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Magnesium atom in the Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae (pdb code 4r7t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae, PDB code: 4r7t:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:37.9 occ:1.00 O A:HOH435 2.0 34.0 1.0 O A:ILE97 2.1 28.2 0.9 O A:HOH414 2.2 23.4 1.0 O A:HOH434 2.2 18.6 1.0 O A:ILE97 2.3 27.8 0.1 C A:ILE97 3.2 28.7 0.9 C A:ILE97 3.3 28.4 0.1 CA A:ASP98 3.9 31.7 1.0 N A:ASP98 4.0 29.3 1.0 N A:ILE97 4.1 29.6 0.1 O A:PHE94 4.1 33.0 1.0 N A:ILE97 4.1 29.9 0.9 CA A:ILE97 4.3 28.7 0.9 CA A:ILE97 4.3 28.7 0.1 O A:ASN95 4.3 27.5 1.0 N A:ILE99 4.4 27.8 1.0 O A:ILE99 4.5 33.5 1.0 C A:ASP98 4.6 31.7 1.0 C A:ASN95 4.7 28.4 1.0 C A:HIS96 5.0 31.3 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg300 b:28.5 occ:1.00 O B:ILE97 2.1 23.1 1.0 O B:HOH435 2.1 26.3 1.0 O B:HOH451 2.1 26.6 1.0 O B:HOH452 2.2 21.1 1.0 O B:HOH422 2.2 24.3 1.0 C B:ILE97 3.2 21.8 1.0 O B:PHE94 3.9 23.5 1.0 CA B:ASP98 4.0 28.6 1.0 N B:ILE97 4.0 27.0 1.0 N B:ASP98 4.1 24.8 1.0 CA B:ILE97 4.2 24.2 1.0 O B:ASN95 4.3 26.9 1.0 N B:ILE99 4.4 29.5 1.0 O B:ILE99 4.4 32.1 1.0 C B:ASN95 4.6 24.9 1.0 C B:ASP98 4.6 32.5 1.0 CA B:ASN95 5.0 22.2 1.0 C B:HIS96 5.0 27.5 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg300 b:36.5 occ:1.00 O C:HOH464 2.1 18.6 0.9 O C:HOH434 2.1 38.1 1.0 O C:ILE97 2.1 27.4 1.0 O C:HOH463 2.3 16.5 0.9 C C:ILE97 3.3 25.2 1.0 CA C:ASP98 3.9 27.2 1.0 N C:ASP98 4.1 24.7 1.0 N C:ILE97 4.2 28.4 1.0 O C:PHE94 4.2 24.4 1.0 CA C:ILE97 4.4 23.4 1.0 O C:ILE99 4.4 30.3 1.0 C C:ASP98 4.4 28.5 1.0 N C:ILE99 4.4 25.3 1.0 O C:ASN95 4.6 29.8 1.0 C C:ASN95 4.8 29.1 1.0 C C:HIS96 4.9 30.0 1.0

N.Maltseva, Y.Kim, K.Kwon, W.F.Anderson, A.Joachimiak, Csgid. Crystal Structure of Glucosamine-6-Phosphate Deaminase From Vibrio Cholerae To Be Published.