Magnesium in PDB 4r94: Structure of the Nickase Domain of NS1 From Mvm Complexed with Magnesium

The structure of Structure of the Nickase Domain of NS1 From Mvm Complexed with Magnesium, PDB code: 4r94 was solved by L.Liang, H.Zhao, L.Tang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.68 / 1.67
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	57.016, 121.377, 41.581, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / 21.2

The binding sites of Magnesium atom in the Structure of the Nickase Domain of NS1 From Mvm Complexed with Magnesium (pdb code 4r94). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Nickase Domain of NS1 From Mvm Complexed with Magnesium, PDB code: 4r94:

Magnesium binding site 1 out of 1 in the Structure of the Nickase Domain of NS1 From Mvm Complexed with Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Nickase Domain of NS1 From Mvm Complexed with Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:20.4 occ:1.00 O A:HOH615 2.1 23.3 1.0 OE1 A:GLU119 2.1 20.7 1.0 O A:HOH421 2.1 22.9 1.0 O A:HOH409 2.1 23.2 1.0 NE2 A:HIS129 2.2 20.2 1.0 NE2 A:HIS127 2.3 20.2 1.0 CE1 A:HIS129 3.2 20.2 1.0 CD2 A:HIS129 3.2 19.5 1.0 CE1 A:HIS127 3.2 19.7 1.0 CD2 A:HIS127 3.3 17.5 1.0 CD A:GLU119 3.3 19.9 1.0 O A:HOH563 4.1 40.5 1.0 CB A:GLU119 4.1 17.4 1.0 OE2 A:GLU119 4.1 19.2 1.0 O A:HOH448 4.2 29.8 1.0 O A:HOH560 4.2 35.4 1.0 CG A:GLU119 4.2 17.7 1.0 NZ A:LYS214 4.2 24.0 1.0 ND1 A:HIS129 4.3 19.5 1.0 O A:HOH562 4.3 42.1 1.0 CG A:HIS129 4.3 18.0 1.0 ND1 A:HIS127 4.4 19.5 1.0 CG A:HIS127 4.4 18.6 1.0 O A:HOH473 4.7 33.9 1.0 OH A:TYR210 5.0 31.5 1.0

S.K.Tewary, L.Liang, Z.Lin, A.Lynn, S.F.Cotmore, P.Tattersall, H.Zhao, L.Tang. Structures of Minute Virus of Mice Replication Initiator Protein N-Terminal Domain: Insights Into Dna Nicking and Origin Binding. Virology V.476C 61 2014.
ISSN: ISSN 0042-6822
PubMed: 25528417
DOI: 10.1016/J.VIROL.2014.11.022