Magnesium in PDB 4rdc: The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Proline

The structure of The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Proline, PDB code: 4rdc was solved by K.Tan, H.Li, R.Jedrzejczak, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.58 / 1.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	35.011, 113.357, 40.404, 90.00, 105.94, 90.00
R / Rfree (%)	13.3 / 15.5

The binding sites of Magnesium atom in the The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Proline (pdb code 4rdc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Proline, PDB code: 4rdc:

Magnesium binding site 1 out of 1 in the The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Proline


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Proline within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:12.6 occ:1.00 O A:ILE388 2.3 13.2 1.0 O A:VAL166 2.3 12.1 1.0 O A:HOH611 2.4 15.8 1.0 O A:GLY163 2.4 13.8 1.0 O A:PRO160 2.4 13.8 1.0 O A:HOH728 2.5 18.7 1.0 C A:ILE388 3.3 12.6 1.0 C A:PRO160 3.4 11.8 1.0 C A:GLY163 3.5 13.6 1.0 C A:VAL166 3.5 11.1 1.0 CA A:PRO160 3.9 12.8 1.0 CA A:ILE388 3.9 13.6 1.0 N A:VAL166 4.0 12.2 1.0 CA A:ASP164 4.0 15.3 0.5 CA A:ASP164 4.1 15.9 0.5 CA A:VAL166 4.1 11.8 1.0 CB A:ILE388 4.2 15.5 1.0 N A:ASP164 4.2 14.8 1.0 N A:GLY389 4.2 12.1 1.0 CB A:VAL166 4.2 12.2 1.0 CB A:PRO160 4.3 15.7 1.0 N A:GLY163 4.4 14.7 1.0 CA A:GLY389 4.4 12.6 1.0 O A:HOH644 4.4 18.9 1.0 C A:ASP164 4.4 14.9 1.0 CA A:GLY163 4.5 15.5 1.0 O A:HOH657 4.5 14.9 1.0 N A:GLU161 4.6 12.8 1.0 N A:ALA167 4.6 11.0 1.0 OD1 A:ASP164 4.8 22.7 0.5 N A:TYR165 4.8 14.2 1.0 O A:ASP164 4.9 16.1 1.0 CA A:ALA167 4.9 11.6 1.0 CG1 A:VAL166 5.0 12.6 1.0

K.Tan, H.Li, R.Jedrzejczak, A.Joachimiak. The Crystal Structure of A Solute-Binding Protein (N280D Mutant) From Anabaena Variabilis Atcc 29413 in Complex with Proline. To Be Published.