Atomistry » Magnesium » PDB 4rcz-4rkf » 4rg8
Atomistry »
  Magnesium »
    PDB 4rcz-4rkf »
      4rg8 »

Magnesium in PDB 4rg8: Structural and Biochemical Studies of A Moderately Thermophilic Exonuclease I From Methylocaldum Szegediense

Protein crystallography data

The structure of Structural and Biochemical Studies of A Moderately Thermophilic Exonuclease I From Methylocaldum Szegediense, PDB code: 4rg8 was solved by L.Fei, S.Tian, R.Moysey, M.Misca, J.J.Barker, M.A.Smith, P.A.Mcewan, E.S.Pilka, L.Crawley, T.Evans, D.Sun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.08 / 2.12
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.967, 97.020, 111.411, 90.00, 90.00, 90.00
R / Rfree (%) 22.3 / 25.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structural and Biochemical Studies of A Moderately Thermophilic Exonuclease I From Methylocaldum Szegediense (pdb code 4rg8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structural and Biochemical Studies of A Moderately Thermophilic Exonuclease I From Methylocaldum Szegediense, PDB code: 4rg8:

Magnesium binding site 1 out of 1 in 4rg8

Go back to Magnesium Binding Sites List in 4rg8
Magnesium binding site 1 out of 1 in the Structural and Biochemical Studies of A Moderately Thermophilic Exonuclease I From Methylocaldum Szegediense


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structural and Biochemical Studies of A Moderately Thermophilic Exonuclease I From Methylocaldum Szegediense within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:45.7
occ:1.00
O A:HOH714 2.3 39.7 1.0
OD1 A:ASP11 2.3 43.8 1.0
O A:HOH697 2.5 62.5 1.0
O A:HOH696 2.6 48.8 1.0
CG A:ASP11 3.0 41.4 1.0
OD2 A:ASP11 3.1 46.4 1.0
O A:HOH754 3.9 47.8 1.0
OD2 A:ASP104 4.0 40.9 1.0
O A:TYR12 4.3 38.1 1.0
CB A:ASP11 4.5 39.8 1.0
OD1 A:ASP104 4.5 39.1 1.0
O A:TYR98 4.5 33.7 1.0
OD2 A:ASP182 4.6 48.1 1.0
O A:HOH601 4.6 38.3 1.0
CG A:ASP104 4.7 39.2 1.0
O A:HOH659 4.7 52.0 1.0
O A:HOH723 4.8 21.9 0.5

Reference:

L.Fei, S.Tian, R.Moysey, M.Misca, J.J.Barker, M.A.Smith, P.A.Mcewan, E.S.Pilka, L.Crawley, T.Evans, D.Sun. Structural and Biochemical Studies of A Moderately Thermophilic Exonuclease I From Methylocaldum Szegediense. Plos One V. 10 17470 2015.
ISSN: ESSN 1932-6203
PubMed: 25658953
DOI: 10.1371/JOURNAL.PONE.0117470
Page generated: Tue Aug 20 03:04:15 2024

Last articles

Ca in 2Y1N
Ca in 2Y31
Ca in 2Y09
Ca in 2XZV
Ca in 2XZ1
Ca in 2XWG
Ca in 2XXL
Ca in 2XRC
Ca in 2XY8
Ca in 2XTS
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy